KEGG   Pseudomonas protegens Pf-5: PFL_2730
Entry
PFL_2730          CDS       T00249                                 
Symbol
sbcD
Name
(GenBank) exonuclease SbcCD, D subunit
  KO
K03547  DNA repair protein SbcD/Mre11
Organism
pfl  Pseudomonas protegens Pf-5
Brite
KEGG Orthology (KO) [BR:pfl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfl03400]
    PFL_2730 (sbcD)
DNA repair and recombination proteins [BR:pfl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     PFL_2730 (sbcD)
    Archaeal homologous recombinant proteins
     PFL_2730 (sbcD)
SSDB
Motif
Pfam: SbcD_C Metallophos Metallophos_2 Flavi_M
Other DBs
NCBI-ProteinID: AAY92003
UniProt: Q4KD46
LinkDB
Position
complement(3015288..3016532)
AA seq 414 aa
MRLFHTSDWHLGQNLHGQERDFEHACFLEWLLRQLKHEQPDVLLIAGDIFDTVNPPVSAQ
ERLYDFIVSAHEQQPALTVVMIAGNHDSGSRIELPAPLMRRLRTHALGRVLWLDDGQLDA
ERLLLPLPDASGQVAAWCLALPFLRPAEVTGRQLGDDYLKGIAQVHEWLIAAANAKRQPG
QALVAVSHAHMAGGSVSEDSERSLIIGNAEALPASLFGPDISYVALGHLHKPQKVNGEER
IRYSGSPIPLSFSEIGYQHQILDVRLDGETLVSVEPRLIPRAVNLQRLGPAPLGELLTQL
GELPDIDLLAEEQRQPWLEVRVRLDEPQPDLRQQVESALQGKAVRLVRIAAEYAGKGAGD
GEEASAELIELDQLTPEELFRRAWRDAYANEVDEATLKDFALLLQDVQQEGEQP
NT seq 1245 nt   +upstreamnt  +downstreamnt
ttgcgtctgtttcacacctccgactggcacctgggccagaacctccacggccaggaacgc
gacttcgaacacgcctgtttcctggagtggctgctgcgccagctcaagcacgaacagccc
gatgtgctgctgatcgccggcgatatcttcgacaccgtcaacccgccggtcagcgcccag
gagcggctctacgacttcatcgtcagcgcccacgagcagcagccggccctgaccgtcgtg
atgatcgccggcaatcacgactccggctcgcgcatcgagctgccggcgcccttgatgcgc
cgcctgcgcacccacgccctgggccgggtgctgtggctggacgacggccagttggacgcc
gagcgcctgctgctgccgctgcccgacgccagcggccaggtcgccgcctggtgcctggcc
ctgccgttcctgcggccggcggaagtcaccggccgccagctgggcgacgactacctcaag
ggcattgcccaggtccacgaatggctgatcgctgcggccaacgccaagcgccagccgggc
caggccctggtcgccgtcagccatgcgcacatggccggcggctcggtctcggaagattcc
gaacgcagcctgatcatcggcaacgccgaggccctgcccgccagcctgttcggcccggac
atcagctacgtggccctgggccacctgcacaagccgcagaaggtcaacggcgaggagcgc
atccgctacagcggctcgccgatcccgctgtcgttttccgagatcggctaccagcaccag
atcctcgacgtgcgcctggacggcgagaccctggtcagcgtcgaaccgcggctgattccc
cgcgcggtgaacctgcaacgcctgggcccggcgcccctgggggaactcctgacccagctc
ggcgagctgccggacatcgacctgttggccgaggagcagcgccagccctggctggaagtg
cgggtgcgcctggacgagccccagccggacctgcgccagcaagtggaaagcgccctgcaa
ggcaaggccgtgcgcctggtgcggatcgccgccgaatacgccggcaagggcgcaggtgac
ggtgaagaggccagtgccgagctgatcgagctggaccagctgacccccgaagagctgttc
cgccgcgcctggcgcgacgcttacgccaacgaggtggacgaagccaccctcaaggatttc
gccctgctgttgcaggacgtccagcaagaaggtgaacagccatga

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