Pseudomonas protegens Pf-5: PFL_2730
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Entry
PFL_2730 CDS
T00249
Symbol
sbcD
Name
(GenBank) exonuclease SbcCD, D subunit
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pfl
Pseudomonas protegens Pf-5
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_2730 (sbcD)
DNA repair and recombination proteins [BR:
pfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PFL_2730 (sbcD)
Archaeal homologous recombinant proteins
PFL_2730 (sbcD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Flavi_M
Motif
Other DBs
NCBI-ProteinID:
AAY92003
UniProt:
Q4KD46
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Position
complement(3015288..3016532)
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AA seq
414 aa
AA seq
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MRLFHTSDWHLGQNLHGQERDFEHACFLEWLLRQLKHEQPDVLLIAGDIFDTVNPPVSAQ
ERLYDFIVSAHEQQPALTVVMIAGNHDSGSRIELPAPLMRRLRTHALGRVLWLDDGQLDA
ERLLLPLPDASGQVAAWCLALPFLRPAEVTGRQLGDDYLKGIAQVHEWLIAAANAKRQPG
QALVAVSHAHMAGGSVSEDSERSLIIGNAEALPASLFGPDISYVALGHLHKPQKVNGEER
IRYSGSPIPLSFSEIGYQHQILDVRLDGETLVSVEPRLIPRAVNLQRLGPAPLGELLTQL
GELPDIDLLAEEQRQPWLEVRVRLDEPQPDLRQQVESALQGKAVRLVRIAAEYAGKGAGD
GEEASAELIELDQLTPEELFRRAWRDAYANEVDEATLKDFALLLQDVQQEGEQP
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtctgtttcacacctccgactggcacctgggccagaacctccacggccaggaacgc
gacttcgaacacgcctgtttcctggagtggctgctgcgccagctcaagcacgaacagccc
gatgtgctgctgatcgccggcgatatcttcgacaccgtcaacccgccggtcagcgcccag
gagcggctctacgacttcatcgtcagcgcccacgagcagcagccggccctgaccgtcgtg
atgatcgccggcaatcacgactccggctcgcgcatcgagctgccggcgcccttgatgcgc
cgcctgcgcacccacgccctgggccgggtgctgtggctggacgacggccagttggacgcc
gagcgcctgctgctgccgctgcccgacgccagcggccaggtcgccgcctggtgcctggcc
ctgccgttcctgcggccggcggaagtcaccggccgccagctgggcgacgactacctcaag
ggcattgcccaggtccacgaatggctgatcgctgcggccaacgccaagcgccagccgggc
caggccctggtcgccgtcagccatgcgcacatggccggcggctcggtctcggaagattcc
gaacgcagcctgatcatcggcaacgccgaggccctgcccgccagcctgttcggcccggac
atcagctacgtggccctgggccacctgcacaagccgcagaaggtcaacggcgaggagcgc
atccgctacagcggctcgccgatcccgctgtcgttttccgagatcggctaccagcaccag
atcctcgacgtgcgcctggacggcgagaccctggtcagcgtcgaaccgcggctgattccc
cgcgcggtgaacctgcaacgcctgggcccggcgcccctgggggaactcctgacccagctc
ggcgagctgccggacatcgacctgttggccgaggagcagcgccagccctggctggaagtg
cgggtgcgcctggacgagccccagccggacctgcgccagcaagtggaaagcgccctgcaa
ggcaaggccgtgcgcctggtgcggatcgccgccgaatacgccggcaagggcgcaggtgac
ggtgaagaggccagtgccgagctgatcgagctggaccagctgacccccgaagagctgttc
cgccgcgcctggcgcgacgcttacgccaacgaggtggacgaagccaccctcaaggatttc
gccctgctgttgcaggacgtccagcaagaaggtgaacagccatga
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