Pseudomonas protegens Pf-5: PFL_3939
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Entry
PFL_3939 CDS
T00249
Symbol
liuD
Name
(GenBank) methylcrotonyl-CoA carboxylase, alpha-subunit LiuD
KO
K01968
3-methylcrotonyl-CoA carboxylase alpha subunit [EC:
6.4.1.4
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl00280
Valine, leucine and isoleucine degradation
pfl01100
Metabolic pathways
Module
pfl_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09100 Metabolism
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
PFL_3939 (liuD)
Enzymes [BR:
pfl01000
]
6. Ligases
6.4 Forming carbon-carbon bonds
6.4.1 Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
6.4.1.4 methylcrotonoyl-CoA carboxylase
PFL_3939 (liuD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
Biotin_carb_N
Biotin_carb_C
Biotin_lipoyl
Dala_Dala_lig_C
BT_MCC_alpha
ATP-grasp
Biotin_lipoyl_2
HlyD_3
HlyD_D23
GARS_A
ATP-grasp_3
ATPgrasp_ST
ATP-grasp_5
ATP-grasp_4
Motif
Other DBs
NCBI-ProteinID:
AAY93203
UniProt:
Q4K9P4
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All DBs
Position
4552193..4554139
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AA seq
648 aa
AA seq
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MSAPVLDTLLVANRGEIACRVMRTAKALGLTTVAVHSATDRDARHSREADIRVDLGGSKA
ADSYLQIDKLIAAARASGAQAIHPGYGFLSENAGFARAIEAAGLIFLGPPAAAIDAMGSK
SAAKALMETAGVPLVPGYHGEAQDLETFRNAAERIGYPVLLKATAGGGGKGMKVVEDVSQ
LAEALASAQREAQSSFGDSRMLVEKYLLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQ
KVVEEAPAPGLSPQLRKAMGEAAVRAAQAIGYVGAGTVEFLLDARGEFFFMEMNTRLQVE
HPVTEAITGLDLVAWQIRVARGETLPISQEQVPLRGHAIEVRLYAEDPANDFLPATGRLE
LYRESVAGPGRRVDSGVEEGDSVSPFYDPMLGKLIAWGEDREQARLRLLSMLDEFVIGGL
KTNLAFLRRIIAHPAFAEAQLDTGFIPRYQEQLLPVAGELSADFWQAAAQAYSQSQPPRT
RSDDPDSPWSAINGWRNGLPAQTSLHLSCAGQDQAISLGARTAAFELQGEHLWTEQQGLR
REHRAIRRGDTLYLNWQGDTHAVSAYDPIAAAEASHSQQGGLTAPMNGSIVRILVSPGQS
VEAGTQLVVLEAMKMEHSIRAPQAGVIKALYCQEGEMVSEGSALVELE
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcccctgttctagacaccctgctggtggccaaccgcggcgagatcgcctgccgg
gtgatgcgcaccgccaaggccctgggcctgaccaccgtggccgtgcatagcgctaccgac
cgcgacgcccggcacagccgtgaagcggatatccgcgtggatctgggcggcagcaaggct
gccgacagctacctgcagatcgacaagctgattgccgccgcccgggccagcggcgcccag
gccatccatcccgggtatggatttctctcggagaacgccggttttgcccgagccatcgaa
gccgccgggctgattttcctcggcccgcctgccgcggccatcgacgccatgggcagcaag
tcggcagccaaggcgctgatggaaaccgccggggtgcccctggttccgggttaccacggt
gaagcccaggacctggaaaccttccgcaatgccgccgaacgcatcggctacccggtgctg
ctcaaggccaccgcgggcggtggcggcaagggcatgaaagtcgtcgaggacgtcagccaa
ctggccgaagccctggcctcggcccagcgcgaagcccagtcgtccttcggcgattcgcgg
atgctggtggaaaagtacctgctcaagccacggcacgtggagatccaggtgtttgccgac
cagcacggcaactgcctgtacctcaacgaacgcgactgttcgatccagcgccgccaccag
aaagtggtcgaggaagctccggccccgggcctcagcccccaactgcgcaaggcaatgggc
gaagccgcggtgcgcgcggcccaggccattggctacgtgggcgccggcaccgtggagttt
ctcctggatgcccgtggcgagttcttcttcatggagatgaacacccgattgcaggtggaa
cacccggtcaccgaggccatcactggcctggacctggtggcctggcagatccgcgtggcc
cgcggcgaaaccctgcccatcagccaggagcaggtgccactgcgcgggcatgcgatcgaa
gtacggctgtatgccgaagacccggccaacgactttcttccggccaccgggcgcctggag
ctgtaccgcgaatcggttgcaggccccggtcggcgggtggacagcggtgtcgaggaaggc
gacagcgtttcgcccttctacgacccgatgctgggcaagctcattgcctggggcgaagac
cgcgagcaggcgcgcctgcggttgctgagcatgctcgacgagttcgtcatcggtggcctg
aagaccaacctggcgtttctacggcgcatcattgcccacccggcctttgccgaagcacag
ctggataccggctttatccctcgctatcaggagcagttgctgccagtcgcaggcgagctg
agtgcagacttctggcaagccgccgcccaagcctacagccaaagccagccgccacgcaca
cgaagcgatgatcccgactcgccatggtccgccatcaacggctggcgcaacggcctgcca
gcgcaaaccagcctgcacctgagctgcgccggccaggatcaggccatcagccttggcgct
cgcactgcggcctttgagctgcagggcgagcacctatggacagagcaacaaggactgcgc
cgcgagcaccgggccatccgccgcggcgacaccctgtacctgaactggcagggcgacaca
catgccgtcagcgcctatgacccgattgccgcggccgaagccagccatagccagcaaggc
gggctgactgcgccgatgaatggcagcatcgttcggatattggtcagcccggggcaaagc
gtcgaggccggtacgcaattggtggtgctggaagccatgaagatggagcacagcattcgt
gcaccccaggccggggtcatcaaggcgctgtattgccaggaaggcgaaatggtcagcgaa
ggcagtgcattggtggagttggaataa
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