Pseudomonas protegens Pf-5: PFL_4034
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Entry
PFL_4034 CDS
T00249
Name
(GenBank) putative diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl00300
Lysine biosynthesis
pfl00470
D-Amino acid metabolism
pfl01100
Metabolic pathways
pfl01110
Biosynthesis of secondary metabolites
pfl01120
Microbial metabolism in diverse environments
pfl01230
Biosynthesis of amino acids
Module
pfl_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PFL_4034
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PFL_4034
Enzymes [BR:
pfl01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
PFL_4034
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
AAY93295
UniProt:
Q4K9F2
LinkDB
All DBs
Position
complement(4650076..4651065)
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AA seq
329 aa
AA seq
DB search
MAAFYDARGNIYGVVTPARLRSLGVALPGSAAQAARDRRLWSEQAIAALCDWAPGTRPPG
AKAHRSDGLLVGPFQDVAPFDLLIVNTDGTLAERSGNGLTIFSQALAEQGLLAEQGPTLL
QVHHDQPTGTSPVATVVEPARVAGVPGFWLDLGQPSFGPEAVAAIGVETVTLNGRELSRV
APLQALDPLWEHSQFVRIGNPHCVTLLEDAEALPGNPQMLEAPLAEGLTATAFALPLGSG
EPCPAGVNLQWAARESAQRIVARVFERGEGPTASSGTSASAVASAAWRVGWVKAGEVQVV
MPGGTAPLRLEEQDGELRRVCLFGQAVRL
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctacgatgcacggggcaacatctatggggtggtgacacccgcgcggttg
cgcagcctgggggtcgccttgcccggcagcgccgcccaggccgcgcgggaccggcgcttg
tggagcgagcaggccatcgccgccctctgtgactgggctccgggcacccgcccgccgggg
gccaaggcccaccgtagcgacggtctgctggtggggccgttccaggacgtggcgcccttc
gatctgctgatcgtcaacaccgacggcaccctggccgagcgcagtggcaatggtttgacg
atcttttcccaggccctggccgagcaggggttgctggccgagcaggggccaaccctgttg
caggtgcaccatgaccagcccaccggtacctcgccggtggccaccgtggtggagccggcc
cgggtggcgggggtgccagggttctggctggacctcggccagccgtccttcgggcccgag
gcggtggccgccattggcgtcgagacggtgaccctgaacggtcgcgagctgagccgggtg
gcaccgttgcaggcactcgatccgctgtgggagcacagccagttcgtgcgcatcggcaac
ccgcactgcgtgaccctgctggaggatgccgaggccttgcccggcaacccgcagatgctc
gaagcgccactggccgaagggctgacggccactgcttttgccttgcccctgggcagcggc
gaaccctgcccggcgggggtcaacctgcaatgggcggcgcgggaatcggcgcagcgcatc
gtcgcccgggtgttcgaacgcggcgaagggccgaccgcgtcgtcgggcaccagcgccagc
gccgtggccagcgcggcgtggcgggtgggctgggtcaaggctggcgaggtgcaggtggtg
atgcccggcggcaccgcgccgttgcgcctggaggaacaggatggcgagctgcgccgggtc
tgcctgtttggtcaggccgtgcgcttgtag
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