Pseudomonas protegens Pf-5: PFL_4447
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Entry
PFL_4447 CDS
T00249
Symbol
rumA
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pfl
Pseudomonas protegens Pf-5
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfl03009
]
PFL_4447 (rumA)
Enzymes [BR:
pfl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PFL_4447 (rumA)
Ribosome biogenesis [BR:
pfl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PFL_4447 (rumA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
MTS
Methyltransf_11
Methyltransf_23
PCMT
Methyltr_RsmB-F
TRM5-TYW2_MTfase
Methyltransf_15
RrnaAD
Methyltransf_12
DREV
Fer2
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
AAY93698
UniProt:
Q4K898
LinkDB
All DBs
Position
complement(5156067..5157419)
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AA seq
450 aa
AA seq
DB search
MAKHDRGLRFQPAGGSRAPQIPVGKKQRLTIQRLANDGRGIAFVEGRTWFVSGALAGEEV
EARVLGSHGKVVEARAERIFNASDLRRPAACAHAGRCGGCSVQHLPHDEQLALKQRMLAE
QLSKVAGVEPEAWAAPLSGPEFGYRRRARVAVRWDAKGKQLEVGFRAAGSQDIVAIDDCP
VLVQALQPVMNRLPAMLRRLSKPQALGHVELFSGSALAVLLRHMAPLSDSDLTILKDFCD
FHQAQLWLHGEGEPQPFDPSQALGYRLETWDLHLAYRPGDFVQVNAGVNEAMVAQALEWL
APQADERVLDLFCGLGNFALPLARQVREVVAVEGVATMVARAAENAASNNLHNTRFFQAD
LSQPLSAAEWADEGFSAVLLDPPRDGAFEVVRQLATLGAKRLVYVSCNPATLARDTVELI
KQGYRLKRAGILDMFPQTAHVEAMALFEAS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggctaagcacgatagaggcctgcgcttccagcctgcgggcggcagccgggcgccgcag
attccggtgggcaagaaacagcgtttgacgattcagcgtctggccaacgacggccgtggc
attgcctttgtcgaagggcgtacctggtttgtcagcggtgccctggccggtgaagaagtc
gaagctcgggtgttgggcagccacggcaaagtggtggaggcccgtgccgagcgtatcttc
aacgccagtgatctgcgtcgcccggcggcctgtgcccatgccgggcgttgcggcggttgc
agtgtccagcatttgccccatgacgaacagcttgccctgaaacagcgcatgctcgccgag
cagttgtccaaggtcgcgggtgtcgagcccgaggcctgggccgcccccttgagcggtccc
gagttcggctatcggcgccgcgcccgggtggcggtgcgctgggacgccaagggcaagcaa
cttgaggtgggttttcgcgctgccggtagccaggacattgtcgccatcgacgattgcccg
gtgctggtacaggccttgcaacctgtcatgaaccgtttgcccgccatgctgcgacgcttg
agcaagcctcaggcattggggcatgtggagttgttcagcggttcggccctggcggtgctt
ttgcgccacatggcgccgttgtccgacagcgacctgacgatcctcaaggacttctgcgat
ttccatcaggcgcaattgtggctgcacggtgaaggcgagccgcaaccctttgatccatcg
caggctctgggctatcgcctggagacctgggacctgcacctggcgtatcggccgggtgac
ttcgtccaggtcaatgcgggagtcaatgaagcgatggtcgcccaggccctggagtggctg
gcgccgcaagctgatgagcgggtgctggacctgttttgcggcctgggcaacttcgccttg
ccgttggcccgacaggtgcgggaagtggtggcggtagagggcgtggcgaccatggtggcg
cgcgcggcggagaatgccgccagcaacaatttgcataacacgcgcttttttcaagccgat
ttatcccaacctctgagcgctgccgagtgggctgatgaaggcttttctgcggtactcttg
gacccaccccgcgacggtgctttcgaggtggtccgccagttggcgaccctgggtgccaag
cggttggtgtacgtgtcatgcaatccggcaactttggctcgtgacacggtcgaactgatc
aagcagggctatagattaaaacgtgccgggatcctcgatatgtttcctcagacggcgcat
gtcgaggccatggcgttatttgaagcgagctag
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