Pseudomonas protegens Pf-5: PFL_4672
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Entry
PFL_4672 CDS
T00249
Symbol
topA_2
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfl
Pseudomonas protegens Pf-5
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfl03032
]
PFL_4672 (topA_2)
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_4672 (topA_2)
Enzymes [BR:
pfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PFL_4672 (topA_2)
DNA replication proteins [BR:
pfl03032
]
Prokaryotic type
DNA Topoisomerases
PFL_4672 (topA_2)
DNA repair and recombination proteins [BR:
pfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PFL_4672 (topA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_recom
Zn_ribbon_Top1
Toprim_4
DUF6371
zf_Tbcl_Rhp7
Motif
Other DBs
NCBI-ProteinID:
AAY93915
UniProt:
Q4K7M8
LinkDB
All DBs
Position
5393086..5395002
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AA seq
638 aa
AA seq
DB search
MKLMIIEAPGKLKKLAPMLKKLRPGEHWEVVASGGHIRDLPEKGHDDTMIIAGVLKDLRP
VYTIRDKSSGRIKTMREALARATEIYIATDPDREGESIAWHIQQTLRIRDYKRIAFNEVT
HTRVKEALANPRKIDAQLVASQECRRVLDRLVGYLVTGELRRVLGLPTTAGRVQSVAVYL
VVLREREIRDFKVVHHFGVRLQFQNQTTGSSWTADWVTVPDFTSKEHPYVQDGTLAAQVA
GVRNVIVESCEDTKERRAPYPPYISSTLQQAASVALKWDPDKTMQIAQRLYEQGVITYHR
TDNPNVGDDVMGDIRAVAQALGIPAVEKRREFRAAEGAQLGHPAIAPTTWADEVAGEDDE
QRQLYKLIRIRALASQLADAIYDARIVKLLAKGPDQRPLRFSGSCRTVAYRGWMQLLAGD
DTDEEGAEAANNEIPKLEPKQILPVLNGQVLNQKTKAPPRYTKASLVKELERQGIGRPGT
FASIIKNITSRSQVIEEKRKLIPGPLGEQTIAQLEGRFSFVQTQFTSSMERALDKIADGQ
STYNAVVSKFYEHLQRELSSLKDAPSLRMQSARTSASTTTGPEHQYLCGKCGKHLVRRQK
RGEGGYDFWACSGYKDTGCKVSYPSVKEKPDLTKARGL
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcatgatcatcgaagcgccgggcaagctgaaaaagctggccccgatgctcaag
aaactacggccgggcgagcattgggaggtggtcgccagtggcggccatataagggatctt
cccgagaagggacacgacgacacgatgattattgccggggtgctcaaggatctgcgcccg
gtgtacacgatcagggacaagagttccggcaggatcaaaacgatgcgcgaagctcttgcc
cgggcaacagaaatctacatcgcaacggaccccgatcgggaaggtgaaagtatcgcgtgg
cacatccagcagacactgcggatccgcgactacaagcgcattgcctttaacgaggtcacc
cacacgcgggtgaaggaggcgctggccaatccgcgcaagattgacgcccagctggtggct
tcacaggagtgccggcgagtcctcgataggctcgttggctatctggtgactggtgagcta
cggagggtgcttggactgcccacaacagcaggcagggtacagtcggttgccgtttacctg
gtggtgttgagagagcgcgagatccgcgactttaaggtcgttcaccactttggcgttcgc
ctgcagttccagaaccaaacgactggtagctcctggacggctgactgggtgaccgttcca
gacttcacctccaaggaacacccgtatgtgcaggatggcaccctggctgcacaggtcgcc
ggggtcaggaacgtcattgtggagtcctgcgaagataccaaggaacgccgagccccctac
cctccctacatatcctcaacccttcaacaagcggcgagcgttgcgttgaagtgggaccct
gacaagaccatgcagatcgctcagaggctgtatgaacagggcgtgatcacctaccacaga
acagacaacccgaacgtcggcgacgatgtcatgggtgatatccgcgctgttgcacaagct
cttggtataccagcggttgagaagcgaagggagtttagggcagcggagggagcccaactg
ggccaccccgcgatcgccccaacgacctgggcggacgaggttgcaggggaagatgatgag
cagcgtcagctgtacaaactcatccggatccgggctctggcaagtcagctcgctgatgcc
atctatgacgccaggattgtgaagctcttggcgaaaggcccagatcaacgccctctgcgt
ttcagtggatcttgtaggactgttgcttaccgcggatggatgcagcttctggcgggagac
gacacggatgaagaaggcgctgaagcagccaacaacgagatcccaaagctggagccaaag
cagatcttgccggttctgaatggccaagtgctgaaccagaaaaccaaagctccgccgcgc
tacacgaaagccagtctggtcaaggagctcgaacgtcagggcattgggcggccgggtact
ttcgcctcgatcatcaagaacatcaccagcagatcccaagtgattgaggagaaacgaaag
cttataccaggtccgctcggcgagcagaccattgcccaactcgaaggccggtttagcttc
gtgcagactcagttcaccagcagtatggaacgggccttagacaagattgctgacggccag
agtacctacaacgcagtggtttccaagttttacgaacacctgcagagggaactgtcatcg
ctcaaagacgctccttcactccgtatgcaatctgcacgcacgagcgcttcaacaacgaca
gggcctgaacatcagtacctgtgcggcaaatgcggcaagcacctggtcagacgacagaaa
cgaggtgaaggcgggtatgacttctgggcgtgttccgggtacaaggatacgggatgcaag
gtcagctacccgtcggtcaaagaaaagcccgacctgactaaggccagaggcctctag
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integrated database retrieval system
