Pseudomonas protegens Pf-5: PFL_5041
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Entry
PFL_5041 CDS
T00249
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K12266
anaerobic nitric oxide reductase transcription regulator
Organism
pfl
Pseudomonas protegens Pf-5
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pfl03000
]
PFL_5041
Transcription factors [BR:
pfl03000
]
Prokaryotic type
Helix-turn-helix
Other families
PFL_5041
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
AAA_5
Mg_chelatase
GAF_2
AAA
HTH_8
AAA_2
GAF_3
AAA_16
HTH_50
TIP49
Motif
Other DBs
NCBI-ProteinID:
AAY94269
UniProt:
Q4K6L3
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Position
5799155..5800711
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AA seq
518 aa
AA seq
DB search
MTAKSLLTALLPLVTDLSRELPEGERYRRLLEALRALLPCDATALLRLDGEWLVPLAVNG
LSTDTLGRRFKVSEHPRFAALLSSPGPTRFASDSDLPDPYDGLVEGLDDHLEVHDCMGCP
LFVDERPWGLLTLDALDPQRFEPIELDALQAFASLAAATVSAAQRIERLAQRAENEHQRA
EVYRQASGQNREMIGQSKAHKRLLEEIKLVGGSDLTVLITGETGVGKELVAQAIHAASPR
AEQPIISLNCAALPDTLVESELFGHVRGAFTGATQDRRGKFELANGGTLFLDEVGELSLT
VQAKLLRVLQSGQLQRLGSDQEHRVDVRLIAATNRDLAEEVRNGRYRADFYHRLSVYPLR
VPALRERGRDVLLLSGYFLEQNRSRMGLGSLRLSVEAQQALLAYHWPGNVRELEHLIGRS
ALKALGNHPERPKILSLDAGDLDLPRASERTSAPVEPASATQAMPAVAGDLRQATDHYQR
QLISSCLERHQHNWASAARELGLDRANLSRLAKRLGLR
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaaaatccctgctcaccgccctgcttcccctggtcaccgacctgtcccgcgaa
ctgcccgaaggcgagcgctatcgccgcctgctggaagctctgcgcgccctgctgccctgc
gatgccaccgcactgctacgcctggatggcgagtggctggtgcccctggcggtcaacggc
ttgagcaccgacaccctgggccgccgtttcaaggtcagcgagcatccgcgcttcgccgcc
ctgctcagcagcccgggcccgacccgatttgccagcgacagcgacttgcccgacccctac
gacggcctggtggaagggctcgatgatcacctggaagtgcatgactgcatgggctgcccg
ctgttcgtcgacgagcgcccctggggcctgctgaccctcgatgccctggacccgcagcgc
ttcgaacccattgagctggatgccctgcaagccttcgccagcctcgccgccgcaacggtc
agcgccgcccagcgcatcgaacgcctggcccagcgcgccgaaaacgagcaccagcgggcc
gaggtctatcgccaggccagtgggcagaaccgcgagatgatcggccagagcaaggcccac
aaacgcttgctggaggaaatcaagctggtgggcggcagcgacctgacggtgctgatcacc
ggagaaaccggcgtcggcaaggaactggtcgcccaggctatccacgcggcttcgccccgg
gccgagcagccgatcatcagcctcaactgcgcggccctgcccgacaccctggtggagagc
gagctgttcggccacgtgcgcggcgccttcaccggggccacccaggatcgccggggaaaa
ttcgaactggccaatggcggcacgctgtttctcgatgaagtgggcgagttgtcgctgaca
gtacaggccaaactgctgcgggtgctgcaaagcggccaactgcaacgcctggggtcggac
caggagcatcgggtcgacgtgcgcctgattgccgccaccaaccgcgatctggcggaagaa
gtgcgcaacggccgctatcgtgccgacttctaccaccgtctaagcgtctaccccctgcgg
gtgccggcactgcgcgagcgcggccgcgatgtgctgctgctcagtggctacttcctggaa
cagaaccgctcgcgcatgggcctgggcagcctgcgcctgagcgttgaggcgcaacaggcg
ctgctggcctaccactggccgggcaacgttcgcgagctggagcacttgatcgggcgcagc
gctctgaaagcgctgggcaaccaccccgagcgaccgaagatcctcagcctggatgccggc
gatctggacctgccccgggccagcgaaagaaccagcgcccccgtcgagcctgctagtgca
acccaggccatgcctgccgtagccggcgacctgcgccaggccaccgaccactaccagcgc
caactgatcagcagttgcctggagcggcaccagcacaactgggccagcgccgcccgtgag
ctaggcttggacagggccaatctgagccgcctggccaagcgcctgggcctgcggtaa
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