Pseudomonas protegens Pf-5: PFL_5147
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Entry
PFL_5147 CDS
T00249
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
pfl
Pseudomonas protegens Pf-5
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_5147 (phrB)
Enzymes [BR:
pfl01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
PFL_5147 (phrB)
DNA repair and recombination proteins [BR:
pfl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
PFL_5147 (phrB)
Prokaryotic type
PFL_5147 (phrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
AAY94369
UniProt:
Q4K6A7
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All DBs
Position
5908560..5910005
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AA seq
481 aa
AA seq
DB search
MQLIWLRSDLRLHDNTALSAAAQRGAAVAVYLLSPEQWLAHDDAPCKIDFWLRNLQSLST
ALGRLNIPLLIRSAATWEQAPQVLLELCRQLQVQMLHFNQEYGIHESRRDAAVTRALQHA
GISVQGHLDQLLFQPGSVLTKSGGYFQVFSQFRKVCYSRLHTALPALVKAPGAQLPLSIN
ADPLPQRVEGFPSPTQALRELWPAGDDEAQRRLEKFSDEQIHYYQSERDFPAKPGTSQLS
PYLAAGVISPRQCLHAALRGNQGEFESGSPGAVTWINELLWREFYKHILVGYPRVSRHRA
FRPETEAVKWRHAPEELAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLL
IDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPISQSQKFDSEGRFIK
HWLPQLAGLNKKDIHNPAAMGGLFGVPGYPAPIVDLSRSRERALAAFKALPARMDAGVSH
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcaattgatctggctgcgcagcgatctgcgcctacatgacaacaccgccctgagcgcc
gctgcccagcggggcgcggccgtagcggtgtatctgctgagcccggagcagtggctggcc
catgacgatgcaccgtgcaagatcgatttctggctgcgtaacctgcagtcgctgagcacc
gccctgggccgcctgaatatcccgctgctgatccgcagcgccgccacctgggagcaggcg
cctcaggtcctgctggagctgtgccggcaattgcaggtgcagatgctgcacttcaaccag
gaatacggcatccacgaaagccgccgcgatgcggccgtgacccgggccctgcaacacgcc
ggaatcagcgtccagggtcatctcgaccaattgctgttccagcccggcagcgtactgacc
aagagcggcggctacttccaggtcttcagccagtttcgcaaggtctgctacagccgcctg
cataccgcactgccggccctggtgaaggcacccggggctcagttgccgctgtcgatcaac
gccgatccgctcccgcagcgggtcgaaggctttcccagccccacccaagccctgcgcgag
ctgtggcccgccggcgatgacgaggcgcaaaggcgcctggagaagttcagcgatgaacag
atccactactaccagagcgaacgcgacttcccggccaaacccggcaccagccagctttcg
ccctacctcgccgccggcgtgatctcgccccgccagtgcctgcacgccgccttgcgcggc
aaccagggcgagtttgaaagcggcagccccggggccgtcacctggatcaacgaactgctc
tggcgcgagttctacaaacacatcctggtgggctacccacgggtgtcccggcaccgggcc
tttcgcccggaaaccgaggcggtgaaatggcgccatgcccccgaggaactggcggcctgg
caggaggcccgcaccggcctgccgatcatcgatgccgccatgcgccagctgctggagacc
ggctggatgcataaccgcctgcgcatggtggtggcgatgttcctgaccaagaacctgctg
atcgactggcgcgagggcgagcgtttcttcatgcgccacctgatcgacggcgacctggcg
gccaacaacggcggctggcagtggagctcgtccaccggcaccgattcggcgccctacttc
cgcatcttcaaccccatcagccagtcgcagaagttcgacagtgaggggcgcttcatcaag
cactggctgccgcaactggcggggctgaacaaaaaagatatccacaatccggcggccatg
ggcggcctgttcggcgtgcctggctacccggcgccgatcgtcgatctttcacgctcccgg
gagcgggccctggcggcgttcaaggcactgcccgcgcgaatggatgcaggggtgagccat
gagtga
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integrated database retrieval system
