KEGG   Pseudomonas protegens Pf-5: PFL_5412
Entry
PFL_5412          CDS       T00249                                 
Name
(GenBank) exonuclease family protein
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
pfl  Pseudomonas protegens Pf-5
Pathway
pfl03030  DNA replication
pfl03430  Mismatch repair
pfl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pfl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PFL_5412
   03430 Mismatch repair
    PFL_5412
   03440 Homologous recombination
    PFL_5412
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfl03032]
    PFL_5412
   03400 DNA repair and recombination proteins [BR:pfl03400]
    PFL_5412
Enzymes [BR:pfl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PFL_5412
DNA replication proteins [BR:pfl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PFL_5412
DNA repair and recombination proteins [BR:pfl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PFL_5412
SSDB
Motif
Pfam: RNase_T Rv2179c-like DUF8678 RNase_H_2
Other DBs
NCBI-ProteinID: AAY94622
UniProt: Q4K5K3
LinkDB
Position
complement(6180767..6181378)
AA seq 203 aa
MERIAVIDFETTGISPSSSCRATEIAVVILEQGRIVERYQSLMNAGVRVPAFIEQLTGIS
NAMLRSAPPAEQVMNEVNEFVGITPLLAHNAAFDQKFWDFELGRIKRTRLQNFACSLLLA
RRLMPAAPNHKLGTLTSFAGLPHTGQAHRAMADAEMAANLVAHLAGELRHKHGLRELSHD
FLCKLQKVPAAKVPEHLKRHRGF
NT seq 612 nt   +upstreamnt  +downstreamnt
ttggaacgcattgccgtcatcgactttgaaaccaccgggatctccccgagcagcagttgc
cgggccacggaaatcgccgtggtgatccttgagcaggggcgcatcgtcgagcgttaccag
agcctgatgaatgccggcgtgcgggtgccggcctttattgagcaactgaccggcatcagc
aatgccatgttgcgcagcgcacccccggcagagcaggtgatgaacgaggtcaacgagttc
gtcggcatcacgccgttgctggcgcacaacgcggccttcgaccagaagttctgggatttc
gagctgggccggatcaagcgcacccgcctgcagaacttcgcctgttcgctgctgctggcg
cggcgcctgatgccggcggctcctaatcacaagctgggcaccctgacttcattcgccggc
ctgccgcacaccggccaggctcaccgggccatggccgatgcggaaatggcagccaacctg
gtggcccacctggccggcgaactgaggcacaagcatggcctgcgcgagctgtcccatgac
ttcctgtgcaaactgcagaaggttcccgcggccaaagtccccgaacacctcaagcgccac
cgcgggttctga

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