Pseudomonas protegens Pf-5: PFL_5457
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Entry
PFL_5457 CDS
T00249
Name
(GenBank) putative DNA-3-methyladenine glycosylase
KO
K03652
DNA-3-methyladenine glycosylase [EC:
3.2.2.21
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PFL_5457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_5457
Enzymes [BR:
pfl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
PFL_5457
DNA repair and recombination proteins [BR:
pfl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PFL_5457
Prokaryotic type
PFL_5457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pur_DNA_glyco
DUF6412
PGM_PMM_III
Motif
Other DBs
NCBI-ProteinID:
AAY94667
UniProt:
Q4K5F8
LinkDB
All DBs
Position
6227566..6228252
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AA seq
228 aa
AA seq
DB search
MSILTSAKLPKALPDGFFDRDAELLARELLGKVIRHKVGDLWLSARIIETEAYYCEEKGS
HASLGYTEKRKALFLDGGHIYMYYARGGDSLNFSARGPGNAVLIKSAYPWVDEVSGPASL
AQMLLNNPDASGRPRPAQKLCAGQTLLCKALGLKVPVWDAKRFDHEILFVEDVGAAVPHI
LQTTRLGIPHGRDEHLMYRFVDAAYAPYCTRNPMRRGQVEGRDYLVLG
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atgtccattctgacctctgcaaaactgccaaaagccctgccggacggctttttcgaccgt
gatgccgagcttttggcccgcgaactgttgggcaaagtcatccgccataaagtcggcgat
ctgtggctgtccgcgcgcattatcgaaaccgaagcctattactgcgaggaaaaaggcagc
cacgcctccctcggctacacagaaaagcgtaaggctttgtttctggacggcggccacatc
tatatgtactacgcccgcggcggcgactccctgaacttcagcgcccggggccctggcaat
gccgtactgatcaagtccgcctatccctgggtcgatgaagtctccggccctgccagcctg
gcgcagatgctgcttaataatccggacgccagtggccggccgcgccccgcgcaaaagctc
tgcgccggccagaccctgctgtgcaaggccctgggcctgaaggttccggtctgggatgcg
aaacgcttcgatcacgagatcctcttcgtcgaagatgtgggcgccgccgtgccacacatc
ctccagaccacccgcctgggcatcccccatgggcgtgacgaacacctgatgtatcgcttt
gtcgatgccgcctacgccccttactgcacgcgcaacccaatgcgtcgcggccaggtcgaa
gggcgcgactacctggtgctcggctga
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