Pseudomonas protegens Pf-5: PFL_5703
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Entry
PFL_5703 CDS
T00249
Name
(GenBank) exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl03030
DNA replication
pfl03430
Mismatch repair
pfl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFL_5703
03430 Mismatch repair
PFL_5703
03440 Homologous recombination
PFL_5703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfl03032
]
PFL_5703
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_5703
Enzymes [BR:
pfl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PFL_5703
DNA replication proteins [BR:
pfl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PFL_5703
DNA repair and recombination proteins [BR:
pfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PFL_5703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AAY94893
UniProt:
Q4K4S2
LinkDB
All DBs
Position
6501451..6502158
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AA seq
235 aa
AA seq
DB search
MSLFAWFRPAVSLLSAEQQQRRDRLPAFTELNESSLREQRWVVVDVETTGLNLNRDQVLS
IGAVVIEDGAIDFSQQFERTLQRQGHKLSPSVLIHGLGPSAIAAGCDPVEALLDFMEFVG
DSPLLAFHAPFDQHMLGRALKDSLGYRLQHSFLDVADMAPLLCPQAQIREAGLDDWVRWF
NLQVVERHNAAADALATAELALILFNRARQQQIHSPLNLQQRLGQWKRRQQAPSF
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgtttgcctggttccgccccgcagtcagcctgctgagtgccgagcagcaacag
cgtcgcgatcggctaccggccttcaccgagctgaatgaaagcagcctgcgagagcagcgc
tgggtagtggtggacgtggaaaccaccggcctcaacctcaaccgcgaccaggtgctgtcc
attggcgcggtggtgatcgaagacggtgccatcgacttcagccagcagttcgagcgcacc
ctgcaacgccagggccacaagctcagccccagcgtactgatccacggcctggggcccagc
gccatcgccgccggctgtgatccggtggaggccctgctggatttcatggagttcgtcggc
gacagcccgctgctggcctttcatgccccgttcgaccagcacatgctcggccgggcgctg
aaggacagcctgggctaccgcctgcaacacagcttcctcgatgtagcggacatggcgccg
ttgctgtgcccccaggcccagatccgcgaagccgggctggacgactgggtgcgctggttc
aacctgcaagtggtggagcggcataacgcggcggccgatgccctggccaccgcggagctg
gcgctgatcctgttcaaccgcgcccgccagcagcagatccacagcccgctgaacctgcaa
cagcgcctgggccagtggaaacgccggcagcaggcaccttcgttctga
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