Pseudomonas protegens Pf-5: PFL_5801
Help
Entry
PFL_5801 CDS
T00249
Symbol
rhlE_2
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFL_5801 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfl03019
]
PFL_5801 (rhlE_2)
Enzymes [BR:
pfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFL_5801 (rhlE_2)
Messenger RNA biogenesis [BR:
pfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFL_5801 (rhlE_2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AAY94991
UniProt:
Q4K4H4
LinkDB
All DBs
Position
6608600..6610468
Genome browser
AA seq
622 aa
AA seq
DB search
MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEVRERPDVRNPRNPRGPRGDGPNGGGGGGG
RKDKGKDKGGKEKPARGERPAREQKPREGTPAREQRQPTPRADRAPDEFLDDDVDNFGNR
ADYVSPYQNKNNQGRGRRPGAPAQGAGAGNPPRGGAGGGQGRSGNPRNSNGSTTGTAPAK
RSGGPRNGAPRDSQGRRDEPRNRRPNRDDQPRQEPAVQNPRGNQPKIMHKESKADRFPTP
EQLDQLPSRPRGEKPALLTRNR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgccatcgaagccgccggc
tacacccagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgat
ctgatggtcgcggcacagacaggtactggtaaaaccggcggtttcgcccttccgatcctg
gaacggttgtttcccaacggtcatccggacaaatcccagcgtcatggcccgcgccaaccc
cgcgtactggtcctgacccccactcgcgagctggccgcgcaagtgcatgacagcttcaag
ctgtacgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggttcaggccatggcccgtggcgtcgatgtgctggtggcatgccccggccgtctg
ctggacctggctggccagggcagcgtcgacctgtcccacgtggaaatcctggttctcgac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtcaagaaagtcctcgcccgc
ctgccggccaagcgccagaacctgctgttctccgcgaccttctccaaggacatcacggac
ctggccggcaagctgctgcacaaccccgagcgcatcgaagtgaccccgccgaacaccacg
gtggagcgtatcgagcagcgggtcttccgcctgccggccagccacaagcgtgccctgctg
gcgcacctgatcaccgccggcgcctgggaacaggtcctggtgttcacccggaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctgagcgctgtggcgatccac
ggcaacaagagccagaacgcccgtaccaaagccctggccgacttcaaggccggcgaagtg
cggatcctggtcgccaccgatatcgccgcccgcggcctggacatcgaccaactgcctcac
gtggtcaacttcgaactgcctaacgtcgacgaagactacgtgcaccgtatcggccgtacc
ggccgtgccggtcgctccggcgaagccatctccctggtggctccggacgaagagaaactg
ctgaaaagcatcgagcgcatgaccaagcagaagatcgccgacggtgacctgatgggcttc
gatgccagcgcagtggaagccgagaagccggaagtgcgcgagcgtccggacgtgcgcaac
ccgcgcaatccccgtggcccacgcggcgatggcccgaacggcggtggcggtggtggcggt
cgcaaggacaagggcaaggacaagggcggcaaggaaaaacccgcccgtggcgaacgcccg
gcccgcgagcagaagcctcgtgaaggcaccccggcccgcgaacagcgtcaaccgacgccc
cgtgccgatcgcgcaccggacgagttcctcgacgacgacgtggacaacttcggtaaccgc
gctgactacgtcagcccgtaccagaacaagaacaaccagggccgcggccgccgcccaggg
gctccggcccagggtgcaggcgctggcaatccgccacgcggcggtgccggtggtggccag
ggtcgctccggcaacccgcgcaacagcaacggcagcaccaccggcaccgcgccggccaag
cgcagtggcggcccgcgcaacggcgcccctcgtgacagccagggccgtcgcgacgagccg
cgcaatcgccgcccgaaccgtgacgatcagccacgccaggaaccggccgtgcagaatcct
cggggcaaccagccgaagatcatgcacaaggaatccaaggccgatcgtttcccgacgcct
gagcagctggatcagttgccaagccgtccacggggcgaaaagccggcgctgctgacccgc
aaccgctga
DBGET
integrated database retrieval system
