Pseudomonas protegens Pf-5: PFL_6013
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Entry
PFL_6013 CDS
T00249
Symbol
dapF_2
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl00300
Lysine biosynthesis
pfl00470
D-Amino acid metabolism
pfl01100
Metabolic pathways
pfl01110
Biosynthesis of secondary metabolites
pfl01120
Microbial metabolism in diverse environments
pfl01230
Biosynthesis of amino acids
Module
pfl_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PFL_6013 (dapF_2)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PFL_6013 (dapF_2)
Enzymes [BR:
pfl01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
PFL_6013 (dapF_2)
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Paralog
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
CntK_N
DUF8756
Motif
Other DBs
NCBI-ProteinID:
AAY95202
UniProt:
Q4K3W2
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All DBs
Position
6833286..6834116
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AA seq
276 aa
AA seq
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MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDF
RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKRQIRVETKSGVIELDIRNDGQISVNM
GAPRLVPADIPFQAPAQADSYTLDVDGRQVQLAAVSMGNPHAVLRVDDINSAPVHELGPK
IEHHPRFPARVNVGFLQVLDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPL
LIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgcgttttaccaagatgcacggcctgggcaatgacttcatggttctcgacctg
gtcagccagcacgcgcatattctgcccaagcacgccaaacaatggggtgatcgcaatacc
gggattggcttcgatcagttgctgatcgtcgaggccccgagcaacccggatgtggatttc
cgctaccggatcttcaactccgacggctccgaagtggaacagtgcggcaatggtgcacgc
tgctttgcccgcttcgtgctggacaagcgcctgaccaccaagcgccagatccgcgtcgag
accaagagcggcgtgatcgagctggatatccgcaacgacggccagatcagcgtcaacatg
ggcgcgccgcgcctggtaccggcggacattccgttccaggcgccggcccaggccgacagc
tacaccctggacgtcgatggccgccaggtgcagttggccgcagtgtccatgggcaacccc
cacgccgtgttgcgggtggatgacatcaacagcgcgccggtgcacgagctgggtccgaag
atcgaacaccacccgcgcttcccggcgcgggtcaacgtcggttttctccaggtcctggac
cgccagcgcgcgcaactgcgggtctgggaacgcggcgccggggaaacccaggcctgcggc
accggtgcctgcgctgctgctgtggccgcgatcagccaggggtggatggattcgccccta
ttgatcgacctgccgggcgggcgcctgtccattgaatgggcaggccctggccaaccggtg
atgatgaccggcccggcagtgcgcgtatacgaaggacaggtgcgtctttaa
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