Pseudomonas protegens Pf-5: PFL_6096
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Entry
PFL_6096 CDS
T00249
Name
(GenBank) Rhs family protein
Organism
pfl
Pseudomonas protegens Pf-5
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
PAAR_motif
TEN_YD-shell
Beta-prop_WDR19_1st
DUF6314
Motif
Other DBs
NCBI-ProteinID:
AAY95284
UniProt:
Q4K3M9
Structure
PDB
PDBj
LinkDB
All DBs
Position
6925413..6929873
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AA seq
1486 aa
AA seq
DB search
MSDALWAARLGDGLEHTSMMADILGGVLEVAANVAIGALATMAVAAAAGITVATGGLGAC
VLGLVVGVVVGVVMSKTGADKGLSNLCEGIANALFPPSIQATIASGSKKVLTNNKPAARA
AGIAPPTQISGDGAEEGEATDTPSATPEEGPGFLDMAKEFFSQMWRPTVASPAPGSQTKE
LDLVTCTKHPPMPVQYLAEGSEKVSIDGQPAVRSGDRSTCDAKVVSAGPISPNVTIGGGS
VVVREIRSGKTPGVGLAVTVLMMLKGGKGKFLSNLPCMLMAGVNSFVVSQATNALTQAVV
ASTHPVHAATGAKVLGADDDLDFTLPGLMPIEWQRFYNSRDERRDGLLGAGWSLPYEISV
QIEPHPEGGERLLYIDEQGRRIDMGSIALGAGAFSPGEGLSVRRNENGQLLIESSDGIYR
LFEPLPGDSSRLRLSLLGDRNDNRLHLEYDSSGRLWLLRDTFEQAQLELSYSTLWPGRIA
QVERLYPDQQREVLVSYDYDAAGDLAQVRDSEGQVQRRFAYDAGHRMIEHQLATGLRCFY
QWTQFADQQWRVTRHWTDEGDSYQYDYDLEAGITQVTDSLQRLSRRRWNSQLQIVEYTDN
LNQTWAFEWNDERQLLSATDPLGGRYAYSYDETGNLIAETDPLGHSHSTLWLEHWSLPQT
LTDPAGESWHLRYDPRGNCIAEVDPLGQVTQYRHDAHGQVVEIIDAAGRSRKMRWNSSGQ
LLEHLDCSGYPTRFEYDRRGNVKAIIDALGEHTRFHYDCQGRLLSSQLADGRAEHFQRSS
NGQLQGYTDPSGYTTLYQYNRRGQIRQRIDAHGRQVRFDYDAYGRLLALTNENGESYRFA
WDAGNRLSEQQDLDGSAKRYGYDLLNNVVELQSHPAPYGTGLSAVPAQPIAPIIHRFERD
AVGRLLAKITDDGRSQYTYDPLNQLTAASFTDNLGNQQALSFSYDALGQLLEEHTVAGSL
IHRYDELGNLTQTQLPDKRWLNRLYYGSGHLHQINLDGQVVSDFQRDRLHREVLRTQGQI
STRSEYDRCGRLRARLQHSSLLANTLPTAPERHLEYDDSDNLVGLAERHATGQHRQLFHY
DATGRIIASQDGLQGQKETFAYDAAANLLDGPKAGAGLVVHNKLLTYQDKRYRYDAFGRM
IEKRSGRRGVQRFAYDAEHRLIEVRNQTSSGETLVRMRYDVLGRRISKSEYDSQGNLLGE
TRFVWDGLRLLQEQRNQQTSLYVYEDLGHAPLARVDGLGAQQKIRYYHNDLNGLPQQLCE
PDGHSVWQARYQVWGNTVEEIREPYYIEEQNLRFQGQYLDRETGLHFNTFRFYDPDIGRF
TTPDPIGLAGGLNLYQYAPNPIGWIDPLGWICKSAYSGRRGTTKAKADLERNGFTVVGEE
LTMKVKHPVTQKSYRIRADIIAKDKAGNYHVFEVKNGSGKLTKNQQGSGMFDMSNPANTN
GGLGGGLIKPSGATQGQFEVATKTARGTQFGGNGAQHSATFWLLRY
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgcactgtgggccgcccgcctgggtgacgggctggaacacacctcgatgatg
gccgacattctcggcggtgtgctggaggtggcggccaacgttgccatcggcgccctggcg
accatggcagtagccgcggcggcaggcatcaccgtggccaccggcggcctcggcgcctgt
gtgctggggctggtggtgggcgtcgtcgtcggcgtggtcatgagcaagaccggagccgac
aagggcctgagcaatttatgcgagggtatcgccaacgccctgttcccgccctcgatccag
gccaccatcgccagcggctcgaaaaaggtcctgaccaacaacaagccggcggcccgcgcg
gccggcatcgcaccgccgacacagatcagcggcgacggcgccgaagaaggcgaagccacc
gacaccccgtcggcaacgcccgaggaagggcccggtttcctcgacatggccaaggagttt
ttctcgcagatgtggcggcccaccgtggcctccccggcgccaggctcccagaccaaggaa
ctggacctggtgacctgcaccaagcacccgccgatgccggtgcagtatctggctgaaggc
tcggaaaaggtcagcatcgacggccagccggcagtacgcagcggcgaccgcagcacctgc
gatgccaaggtagtgtcggccgggcctatctccccgaacgtgaccatcggcggtggctcg
gtggtggtgcgcgagatccgtagcggcaagaccccgggggtgggcctggcggtgaccgtg
ctgatgatgctcaagggcggcaagggcaagttcctcagcaacctgccgtgcatgctgatg
gccggggtcaattcctttgtcgtcagccaggccaccaatgctttgacccaggccgtcgtc
gcctcgacccacccggtgcatgcagccaccggggccaaggtgctcggagccgacgacgat
ctggatttcaccctgcccgggctgatgcccatcgaatggcaacgcttctacaacagccgc
gacgaacgtcgtgacggcctgctcggggccggctggagcttgccttacgagatcagcgtc
cagatcgagccccaccccgaaggtggcgagcgtctgctctacattgatgagcaaggacgc
cgcatcgacatgggctccattgccctgggtgcaggagccttcagccccggtgaaggcttg
agcgtgcgacgcaacgagaacggacagttgctgatcgaaagcagcgacggtatctaccgt
ctgttcgagccgctgccgggcgactcctcgcggctgcgcctgagcctgctgggggaccgc
aacgacaaccgtctgcacctggagtacgactcgtccggacgcctctggctgctgcgtgac
acctttgaacaggcgcagctcgaactgagctacagcacgctctggcccggtcggattgcc
caggtcgaacggctgtaccccgaccagcaacgggaagtgctggtcagctatgactacgat
gcggcaggagacctggcacaggtgcgcgatagcgaaggccaggtacagcgtcgcttcgct
tatgacgccggccaccggatgatcgaacatcaattggccaccgggctgcgctgcttctat
caatggacacaatttgccgaccagcagtggcgagtgacccgtcactggaccgacgaaggc
gatagctatcagtacgactatgatctggaggcgggaatcacccaggtcaccgacagcctg
caacgcctcagccgccgccgctggaacagccagttgcagatcgtcgagtacaccgacaac
ctcaaccagacatgggccttcgagtggaacgatgagcgccaactgctcagcgccaccgac
cccttgggagggcgctatgcctatagctacgacgaaaccggcaacctgatagccgagacc
gatcctctggggcacagccattcgaccttgtggctggagcactggtcgctgccacagacc
ctgaccgatcccgccggagaaagctggcacctgcgctacgatccccggggcaactgtatc
gccgaagtagacccgctgggccaggtgacccagtaccgccatgacgcgcacggccaggtg
gtggagatcatcgatgccgcgggaagaagccggaagatgcgctggaactcgtccgggcaa
ttgcttgaacacctggactgctcgggctatccaacccgcttcgaatacgatcgacgcggc
aacgtgaaagccatcatcgatgcccttggcgagcacacccggttccattacgactgccag
ggacggttgctgagcagccaactggccgatgggcgcgccgagcattttcaacgcagcagc
aacggccagctacagggctacaccgacccttccggctacaccacgctctaccagtacaac
cggcgcgggcagatacgccagcgcatcgacgctcacggccgacaggtccggttcgactat
gacgcgtacggacggctgctggcgctcaccaacgagaacggcgaaagctatcgctttgcc
tgggacgccggcaaccgcctgagcgaacagcaggacctcgacggcagtgccaaacgctat
ggctatgacctgctgaacaacgtcgtcgaactccagtcccaccccgccccttatggcacc
gggctgagcgccgtgcccgcgcaacctatcgcgccgatcatccaccggttcgagcgcgat
gccgtggggcggctgctggccaaaatcacagacgatggccgcagccaatacacctacgac
cccttgaaccaactgaccgccgccagctttaccgacaacctcggcaaccagcaggcactg
agtttcagctacgacgccctgggccaattactcgaagaacacaccgtggccggcagcctg
atccatcgatacgacgaactgggcaatttgactcagacccagctaccggacaagcgttgg
ctcaaccggctctattacggcagcggccatctgcaccagatcaatctcgatggccaggta
gtcagcgactttcaacgtgaccgcctgcaccgtgaggtgctgcgcacccagggtcagatc
agcactcgcagcgaatacgaccggtgtggccgcctgcgcgcacgcctgcagcattccagc
ctgctggcaaacaccttgccaacagccccggagcgacacctggagtacgacgatagcgat
aatctggtgggcctggccgagcgacatgccaccgggcaacatcggcaactgttccattac
gacgcgaccgggcgaatcattgccagccaggacggcctgcagggccagaaagaaaccttc
gcctatgacgccgccgccaatttgcttgatggcccgaaggcgggcgccgggctggtggtg
cacaacaaattgctgacctaccaggacaagcgctaccgctacgatgccttcgggcgaatg
attgaaaaacgcagtggtcggcgaggcgtgcaacgttttgcctacgacgccgaacaccgg
ttgatcgaagtgcgcaatcagacctccagcggcgaaaccctggtcaggatgcgctacgac
gtcttgggtcgccgcatcagcaagagcgagtacgacagccagggcaaccttctgggtgaa
acgcgattcgtctgggatggcctgcggctgctgcaggaacagcgtaatcaacagaccagc
ctctatgtctatgaagacctgggacatgcgcccctggcgcgggtcgacggccttggcgcg
cagcagaagatccgctactaccacaacgacctgaatggcctgcctcaacagctttgcgag
cctgacggccatagcgtctggcaggcccgctatcaggtctggggcaatactgtcgaagaa
atacgcgagccctactacatcgaggaacagaatctcaggttccagggccagtacctggac
cgcgagactggattgcacttcaacacgttccgtttctacgacccggatatcgggcgcttc
accacgccggaccccatcggcctggccggaggcttgaacctttatcagtacgctcccaac
ccaatcggttggatcgatccgctgggctggatctgcaaatcggcctacagcggcagaagg
ggcactacaaaagccaaagctgacctcgagaggaacggtttcactgtggtaggtgaagaa
ttgaccatgaaggtcaaacaccctgtcacccagaagtcctatcgcatcagggcagatatc
atcgccaaggacaaagccggcaactaccacgtgttcgaagtcaaaaatggcagcggcaaa
ctgaccaagaaccaacagggatcgggaatgttcgacatgagcaatccggccaatactaac
ggtggcctgggcggtggcctgatcaaaccgtcgggcgctacccaaggccagttcgaagtt
gcgaccaaaaccgccagaggtacccagttcggtggcaatggcgcacagcattcggccacc
ttctggcttcttcgctattga
DBGET
integrated database retrieval system
