Phytohabitans flavus: Pflav_018130
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Entry
Pflav_018130 CDS
T06516
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pfla
Phytohabitans flavus
Brite
KEGG Orthology (KO) [BR:
pfla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfla03019
]
Pflav_018130 (hrpB)
Enzymes [BR:
pfla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Pflav_018130 (hrpB)
Messenger RNA biogenesis [BR:
pfla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Pflav_018130 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
AAA_22
AAA_19
HA2_N
RoxA-like_Cyt-c
Motif
Other DBs
NCBI-ProteinID:
BCB75403
UniProt:
A0A6F8XNK5
LinkDB
All DBs
Position
complement(2049176..2051605)
Genome browser
AA seq
809 aa
AA seq
DB search
MRQDGVVLPVEKVLPAVEGALRDAGAAVLVAPPGAGKTTVVPLALMEQVSGRVVVAEPRR
IAARAAARRMAGLLGDRVGGRVGYAVRGDRRVSADTRVEVVTTGVLVRRLQRDPDLPGTG
AVILDECHERHLDSDLAMAFCVDVRATLRPDLWLLATSATADTAAMARVLGTEEVVVADE
ASHPVEVVWAPPPRPVDAPHGLRVDPRLLDHVAATVRRALGEHDGDVLVFLPGAGEISAV
ASRLGEVAVLTLHGRQDAASQDAVLRPGTTGRRVVLASAVAESSLTVPGVRVVVDAGLSR
VPRTDHARGLGMLATVPVSRSAADQRAGRAGREAPGVVYRCWSPAQHDRLPAQPEPEIAV
ADLTGFALDLACWGDPDGAGLALPDRPPAGAMRAATQTLRALGAVEAGGRVTARGRAIAA
VGAHPRLARALLDGAPAVGADRAAQVVALLTEQTPGEDLVAAWRRQRSSADHHWTTEVRR
LRAEAGDWPKTELPDDLAAGLVVGLAYPERLARARQPGGTAYLMAGGTAANLAPGSALAG
APWLAIAAADRDPSRPAARIRVAAAIDEATARVAGADQLTRGQEVAWSGGDVVARAFERL
GAVTLVERPLPDPDRDALDRALLEGLRREGLALLRWDRDARALRERLAFCRHALGVPWPD
MSDDALLDTAELWLGPELHAARRRADLERADVATALRRLLPWPQAAALDRMAPERLPVPG
GSRLRLDYTDPQAPVLALRVQEAFGWREAPVIADGRVPVLLHLLSPARRPVAVTADLASF
WRTGYPRVRAELRGRYPRHAWPEDPTTPP
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgcggcaggatggcgtggtgctgcctgtcgagaaggttctacccgcggtcgagggcgcc
ttgcgggatgcgggtgccgccgttctggtggcgccgccgggtgctgggaagacgacggtg
gtgccgctggcgctcatggaacaggtgtccggccgggtggtggtcgcggagccgaggcgg
atcgcggcccgtgcggcggcgcgccggatggcggggcttctgggtgatcgggtcggtggg
cgggtcgggtatgccgttcgcggggatcgccgggtcagcgcggacacccgggtcgaggtg
gtgaccaccggagtgctcgtgcggcggttgcagcgcgatccggacctgcccggcacgggc
gcggtgattctggacgagtgccatgagcggcacctggactcggatctggccatggcgttc
tgcgtcgatgtacgtgccacgctccggccggacctgtggctgctcgcgacctcggcgacc
gccgacaccgcggctatggctcgggtgttgggcaccgaggaggttgtcgtcgccgacgag
gcgtcgcacccggtcgaggtggtgtgggcgccgccgccgcggccggtcgacgcgcctcat
ggcctgcgcgtcgacccgcggctgctggatcatgtcgcggccacggtgcggcgggcgttg
ggcgagcacgacggcgacgtgctggtgttcctgcccggtgccggtgagatctcggcggtc
gcgtccaggctgggtgaggtcgccgtgctgacgctgcacggccgccaggacgcggcgtcc
caggacgctgtgcttcgaccgggtaccaccggccggcgggtcgtgctggccagtgctgtc
gcggagagcagcctgaccgtgcccggcgtgcgggtggttgtcgacgctggcctgagccgg
gtgccgcgtaccgaccacgcccgcgggctgggcatgctcgccaccgtgccggtgtcgcgg
tcggccgcggaccagcgcgccggacgggccggtcgagaggcgcccggtgtggtgtatcgc
tgttggtcgccggcccagcacgatcggctgccggcccagcctgagcccgagatcgcggtg
gccgacctgaccggcttcgcgctcgatctggcctgctggggcgacccggacggggctggg
ctggcgctgccggaccggcccccggccggtgcgatgcgggcggcgacccagacgctccgc
gcgctcggcgcggtcgaggctggtggtcgggtcacggcgcgcgggcgtgcgatcgccgct
gtcggcgcgcacccgcggctggcgcgggccctgctcgacggcgccccggcggtcggtgcc
gaccgggccgcacaggtcgtcgcgctgctcaccgagcagaccccgggcgaggacctggtc
gcggcgtggcgccggcagcgctccagcgccgatcaccactggacgacggaggtacgccgg
ctgcgtgccgaggccggcgactggcccaagacggaactgccggacgatctggccgctggg
ctggtggttggtctggcgtacccggaaaggctggcccgggctcggcaaccgggcggcacg
gcgtacctcatggcgggtgggaccgccgcgaacctggcgcccgggtcggcgctggcgggc
gcgccgtggctggcgatcgccgccgcggaccgcgaccccagccggcccgcggcgcggatc
cgggtggccgccgcgatcgacgaggcgactgcccgggtggccggcgccgaccagctgacg
cggggccaggaagtggcctggtccggcggcgacgtggtggcccgcgcgttcgaacggctc
ggcgcggtgacgctcgtcgaacggccgctgcccgacccggaccgcgacgcactcgaccgc
gccctgctcgagggcctgcgccgcgagggcctggcgctgctgaggtgggaccgcgacgcg
cgtgcgctgcgcgagcggctggcattctgccggcacgcgctgggcgtcccgtggccggac
atgtccgacgacgccctgctggatacggccgagctgtggctgggtccggaactgcacgcg
gcgcggcgccgagccgatctggaacgggccgacgtcgccaccgccctgcgccggctgctg
ccctggccgcaggccgcggcgctggaccggatggcgcccgagcggctaccggtgcccggc
gggtcacggctgcggctcgactacaccgatccccaggcaccggtgctggcgctgcgggtg
caggaggcgttcggctggcgggaggcgccggtgatcgcggatgggcgagtgcccgtcctg
ctgcacctactgtcgccggcccgccgtccggtcgcggtcacggccgatctggcgtcgttc
tggcgtacgggatatccgcgggtacgcgccgagctgcgcggccgctacccgcgccacgcc
tggcccgaggaccccaccacaccaccctga
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