Phytohabitans flavus: Pflav_088950
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Entry
Pflav_088950 CDS
T06516
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pfla
Phytohabitans flavus
Brite
KEGG Orthology (KO) [BR:
pfla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfla03016
]
Pflav_088950
Enzymes [BR:
pfla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Pflav_088950
Transfer RNA biogenesis [BR:
pfla03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Pflav_088950
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
BCB82485
UniProt:
A0A6F8Y8R2
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All DBs
Position
complement(9389149..9390342)
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AA seq
397 aa
AA seq
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MPLTAPREGTPPPIDTPEQLAEVVARFAAGTGPVAVDAERASGYRYTQRAYLVQLRRAGA
GTVLIDPLPLGDLRTLDEAIADAEWVLHAASQDLPCLADLGLRPRRLFDTELAARLAGFE
RVGLAALTEQLLGYTLEKHHSAADWSTRPLPESWLTYAALDVELLTDLRDKLAAELAAQG
KDAWAGEEFAALVASGAQPPRQRPDPWRRTSGIHRIRGARAQARVRAMWYARDEIASRRD
SAPGRVLPDAAIIAAAELDPKDERTLLTLPGFGGRSVRRLARTWIDALAKARELPDDMLP
VAPPLDGPPPPHRWAERDPIAAARLARCREVVTTAAAAHTLPPENLITPDSVRRLAWTPP
EEIAPDTVAATLRGYGARAWQVGLISDGLAVALRDPE
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
gtgccgctgaccgccccccgcgagggcaccccgcccccgatcgacacgcccgagcagctt
gccgaggtcgtagcccggttcgccgccggtaccggcccggtcgccgtggacgccgagcgc
gcctccggctaccggtacacgcaacgcgcgtacctcgtgcagctgcgccgggctggcgcg
ggcacggtactcatcgatccgctccccctgggtgacctgcgcacgctcgacgaggccatc
gccgacgctgaatgggttctgcacgccgcgagccaggatttgccctgtctcgccgatctt
ggtttgcgaccccgtcgcctttttgacacggaattggccgctcggctggccggattcgag
cgggtcggcttggccgcactgaccgaacagctacttggctacacgctcgaaaagcaccac
tcggccgcagactggtccacacgaccactgcccgagtcgtggctgacgtacgcggcgctg
gacgtcgagctgctcaccgacctgcgggacaagctggcggccgagctggcggcacagggc
aaggacgcgtgggcgggcgaggagttcgcggcgctcgtcgcgtccggcgcgcagccgccc
cgccagcgccccgacccgtggcggcgcacctccggcatccaccgcatccgcggtgcgcgg
gcacaggcccgggtgcgggcgatgtggtacgcgcgggacgagatcgcctcgcggcgcgac
tcggcgcccggccgggtgctgcccgacgcggcgatcatcgcggccgcggagctcgacccc
aaggacgagcggacactgctcacgctgcccggcttcggggggcggtcggtgcggcggctg
gcgcgtacctggatcgatgcgctggccaaggcccgcgagctgccggacgacatgctgccg
gtggcgccgccgctggacgggcccccgccgccgcaccgctgggcggagcgcgacccgatc
gcggccgcccgcctggcccggtgccgcgaggtggtcaccacggcggccgccgcgcacacg
ctgccaccggaaaacctgatcacacccgattcggtacgccggctggcctggacgccgccc
gaggagatcgcgccggatactgtcgcggcgacgcttcgggggtacggcgcgcgggcctgg
caggtgggcttgatctcggacggtctggcggtggcgctgcgcgacccggagtga
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