Pseudoalteromonas maricaloris SCSIO 43202: CTT31_01635
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Entry
CTT31_01635 CDS
T08529
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pfli
Pseudoalteromonas maricaloris SCSIO 43202
Pathway
pfli03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfli00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CTT31_01635 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfli03021
]
CTT31_01635 (rpoC)
03400 DNA repair and recombination proteins [BR:
pfli03400
]
CTT31_01635 (rpoC)
Enzymes [BR:
pfli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CTT31_01635 (rpoC)
Transcription machinery [BR:
pfli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CTT31_01635 (rpoC)
DNA repair and recombination proteins [BR:
pfli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CTT31_01635 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
USE67893
LinkDB
All DBs
Position
1:404358..408539
Genome browser
AA seq
1393 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMVRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLGEEEYLDALEEHGDEFEAKM
GAEAVLDLLRDLDLGQLIAEMREELPTINSETKRKKITKRLKLMEAFHQSGNNPEWMVMS
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREVPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILAPANGEPIIVPSQDVVLGLYYMTRDRINGKGEGTVFKDAKEAEKAYRVG
AAELHARVKVRITEVTIDEETRERGTLTHLVDTTVGRAILSLNIPEGLPFELINKPLGKK
QISGLLNECYRRLGLKDTVIFADQVMYTGFHYAMKSGVSIGINDMVIPPTKGEIIDRAEA
EVAEINQQFQSGLVTAGEKYNKVIDIWSRVNENLSREMMANLSKETVINAEGNEEEQPSF
NSVFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVINESDCGTEEGLVMKPLIEGGDVVEPLRERV
LGRVVAEDVVKPGTTEVLVERNVMIDEKLCDLLEEHSVDEVKVRSVITCQNDFGVCAHCY
GRDLARGHIINPGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNNGNLK
LHNAKFVINADGKIVITSRSTEITIIDEHGREKERYKVPYGAVLTVQDGADVKGNDIVAT
WDPHSHPIIIEHESKVSFSDIDDSNTEAQTDELTGLTRVVVKDLAKVNAKEPKLIIENEE
RGLQEIRLPSFTTIEITDGATVLPGSVLARIPQEGSKTRDITGGLPRVADLFEARKPKDP
AILAEITGTVSFGKETKGKKRLVITPEEGDAYEEMIPKWRQLNVFEGEQVAKGEVIADGP
ESPHDILRLRGVTDVSNYITNEVQEVYRLQGVKINDKHIETIVRQMLRKCIILDGGDSEF
LVGEQAEVARVNIANRELEMQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTE
AAVNGKSDELRGLKENVIVGRLIPAGTGFAYHEERINRRKQGEAAVEEQTVSAEEATQAL
TDALNADLLGGNE
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaagcaacaaaataagaccgaagaattcgatgcaatt
cgcattggtcttgcttcgccagacatggtgcgttcatggtcttacggtgaagtaaagaaa
cctgagacaatcaactaccgtactttcaagcctgagcgtgatggcttattctgtgcccgt
atcttcggcccagtaaaagattacgagtgtttgtgtggtaaatacaagcgcttgaagcac
cgtggtgttatctgtgaaaagtgtggcgttgaagtaacgctaacaaaagtacgtcgtgac
cgtatgggtcacatcgagctggctagcccagttgcgcatatttggttcttgaaatcactt
ccgtcacgtatcggcctaatgctagatatgacgcttcgtgatatcgagcgcgtactttat
ttcgaatcattcgtggtaactgagccaggtatgactacgcttgagcgcggtcaactacta
ggtgaagaagaatacctagatgcacttgaagagcacggtgatgagtttgaagcgaagatg
ggtgcagaagctgtacttgatctacttcgtgacctagaccttggtcagttaatcgctgaa
atgcgtgaagagttgccaacaatcaactctgaaactaagcgtaagaaaatcactaagcgt
cttaaactaatggaagcgttccaccaatcaggtaacaaccctgagtggatggttatgagt
gtgctaccggttcttccaccagatctacgtcctctagtaccactagacggcggtcgtttt
gcgacttcagatctgaacgacctttatcgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagacctagctgcaccagacatcatcgtacgtaacgaaaagcgtatgcttcaa
gaagcggttgatgcgctacttgataatggtcgtcgtggccgtgcaattacaggttctaac
aagcgtccactgaagtcgcttgctgacatgatcaaaggtaagcaaggtcgtttccgtcaa
aaccttctaggtaagcgtgttgactactcaggccgttctgttatcaccgttggtcctaca
ctgaaactacatcagtgtggtctacctaagaagatggcacttgagctattcaagccattt
atctacggtaaactagagcgccgtggtatggcgacaaccatcaaagctgcgaagaagatg
gttgagcgtgaagtaccagaggtttgggacgtactagacgaagttatccgtgagcacccg
gttttacttaaccgtgcgccaacacttcaccgtctaggtatccaagcattcgaacctgta
cttatcgaaggtaaagcgatccacctgcacccgctagtgtgtgcggcgtataacgctgac
ttcgatggtgaccaaatggctgttcacgtaccactgacgcttgaagcgcagttggaagcg
cgtgcattgatgatgtctaccaacaacatcctagcaccagctaacggtgagccaatcatc
gttccttcacaggacgttgtactaggtctttactacatgactcgcgatcgcatcaacggt
aaaggtgaaggcactgtatttaaagatgctaaagaagctgaaaaagcataccgtgtaggt
gctgctgagcttcacgctcgtgttaaagtgcgtatcacagaagtgactatcgacgaagaa
acacgtgagcgcggcactttaactcacctagtagatacgacagtaggtcgtgcaatcctt
tcattgaatatccctgaaggcttgccgtttgaactgatcaacaaaccactaggtaagaaa
caaatttctggtcttcttaacgagtgttaccgtcgtctaggtcttaaagatactgttatc
tttgctgaccaagtgatgtataccggtttccactacgcgatgaagtcaggtgtttctatc
ggtatcaatgacatggtaatcccaccaactaaaggtgagatcatcgatcgtgcggaagct
gaagttgcagaaatcaaccaacagttccaatcaggtcttgtaactgccggtgagaaatac
aacaaagttatcgatatctggtcacgtgtaaacgaaaacctttctcgcgagatgatggct
aacctttcaaaagaaacggttatcaacgctgaaggtaacgaagaagagcaaccgtcattt
aactcagtgtttatgatggcagactcaggcgctcgtggtagtgcagctcagatccgtcag
ctagcgggtatgcgtggtctaatggcacgtccagatggttcaatcatcgaaacgccgatt
acagcgaacttccgtgaaggtctaaacgtactacagtactttatctcgacgcacggtgcg
cgtaagggtctagcggatacggcacttaagacagcgaactcgggttacctaactcgtcgt
ctagtagacgtagcacaagatttggttatcaatgaatcagactgtggtaccgaagaaggt
ctagtaatgaagccgctaattgaaggtggtgacgttgtagagccgcttcgtgagcgtgta
ctaggtcgtgttgttgctgaagacgtggttaagcctggtacaacagaagtactggttgaa
cgtaacgtaatgattgacgaaaaactgtgtgaccttctagaagagcactcagtagacgaa
gttaaagtacgttctgtaatcacctgtcaaaacgactttggtgtgtgtgcacactgttat
ggtcgtgacttggcacgtggccacatcatcaaccctggtgaagcagttggtgtaatcgcg
gcacagtcaatcggtgagccgggtacacagcttacgatgcgtacattccacatcggtggt
gcggcatcacgagcttctgcagagaacagtgttcaagttaagaacaatggtaatctgaaa
cttcacaatgcgaagtttgtaatcaatgctgatggcaaaatcgttatcacgtctcgttca
actgagatcacgataatcgatgaacacggtcgtgagaaagagcgttataaagttccttac
ggtgcagtattaactgtacaagatggtgctgacgttaaaggtaacgatatcgttgctact
tgggacccgcatagccacccaattatcattgaacatgagtcaaaagtatcgttcagcgat
atcgatgattcaaacactgaagcacagactgatgaattaactggtctaacacgagtggtt
gttaaggatcttgcgaaagtaaacgcgaaagagcctaaactaatcattgagaacgaagaa
cgtggtcttcaagagatccgtctgccttcattcacaacgattgaaatcacagatggtgca
acagtactacctggttcggtactggctcgtattccacaagaaggttcgaagactcgtgac
atcacgggtggtctacctcgagttgctgacctattcgaagcgcgtaagccaaaagatcct
gcaatccttgcagaaatcacaggtaccgttagcttcggtaaagagactaaaggtaagaaa
cgtcttgtgatcacaccggaagagggtgatgcatacgaagagatgatcccgaaatggcgt
cagcttaacgtgttcgaaggtgagcaagtggctaaaggtgaagtaatcgccgatggtcca
gagtctccgcacgacatcctacgtctacgtggtgttactgatgtatctaactacatcact
aacgaagtacaagaagtataccgtctacagggcgtaaagattaacgataagcacattgag
actatcgttcgtcagatgcttcgtaagtgtatcatccttgatggtggtgacagtgaattc
ctagtaggcgagcaagctgaagttgcacgtgtaaacatcgctaaccgtgaactagaaatg
caaggtaagatcccagctaagtttgaaatccaactaatgggtattactaaagcgtcactt
gcgactgaatcgtttatttctgcggcatcgttccaggaaacaacacgtgttctaaccgaa
gctgcggttaacggtaagagcgatgagctacgtggtctgaaagaaaacgtaatcgtgggt
cgtttgatcccagcgggtacaggtttcgcataccatgaagagcgcatcaaccgtcgtaag
caaggtgaagcagctgttgaagagcaaacagtaagtgctgaagaggcaactcaagcgcta
acagacgcactaaacgctgatttactaggtggcaacgagtaa
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integrated database retrieval system
