Pseudoalteromonas flavipulchra: CTT31_05615
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Entry
CTT31_05615 CDS
T08529
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pfli
Pseudoalteromonas flavipulchra
Brite
KEGG Orthology (KO) [BR:
pfli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfli03009
]
CTT31_05615
Enzymes [BR:
pfli01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CTT31_05615
Ribosome biogenesis [BR:
pfli03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CTT31_05615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
PCMT
Met_10
Methyltransf_15
Methyltransf_11
PrmA
Methyltransf_4
Cons_hypoth95
RrnaAD
TehB
Methyltransf_23
FtsJ
N6_N4_Mtase
Methyltransf_32
UPF0020
DOT1
Methyltransf_12
NodS
DNA_methylase
Motif
Other DBs
NCBI-ProteinID:
USE68623
LinkDB
All DBs
Position
1:1332691..1334010
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AA seq
439 aa
AA seq
DB search
MAQIFRAKKAAKPSKQIELTIESMDHQGRGVARHEGKVCFVAGALTGERVRAQVVQAKSK
LLEAKMTKVLNASKERVKPFCPHYQQCGGCSLQHQSVDGQLNEKQHAVEKLFARFANIKH
LPWQAPITSMQLHYRRAARLACIYDKQSKSMKLGFRASQSKQIIEIAQCDILVSPFDRIV
NTLSALAQSLSEFRLISHIQLCQADNHNYVLCRHTKPLSALTRETLQNELKNCQVLFDDG
ETPVVYSQLPFYHLNEFGLTLEFKLNNFIQVNQSVNEAMLRQATDWLQLSNDESVLDLFC
GVGNFSLVLAKQAKNVIGVEGEAQSVAMAQQNAQTNQISNVQFHCFDLTQSITEAAWFDA
NLDVLVLDPSRPGALEVLQQLPLTQFTRILYVSCDPVTLARDALVIAQAGFELEKLGLMN
MFVHTGHIETMALFKKQCK
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcacagatttttcgtgctaagaaagctgctaagccgtcaaagcaaatagaattaacc
atagagtcaatggatcatcaggggcgaggtgttgctcgccatgaaggtaaagtctgtttt
gtggctggtgccttgactggtgagcgagtgagagcacaggttgtacaggccaagtctaaa
ctcttggaagcgaagatgaccaaagtacttaatgcctctaaagagcgtgttaagccgttt
tgcccgcattaccagcagtgtggtggctgtagcttgcagcatcaaagtgttgatggtcag
ctcaatgaaaagcaacatgcagttgaaaaactttttgcgcgttttgccaacattaaacac
ttaccttggcaagcaccgatcacctctatgcagcttcattatcgtcgtgcagctcgtttg
gcatgtatttatgataaacaaagcaaaagcatgaagttaggctttagagcaagtcagtcg
aagcagattatcgaaatagcgcagtgtgatatattggtgtcgccttttgatcgtattgtt
aacacgttaagtgcgcttgcacagtcgctaagtgagtttaggttgatcagtcatattcag
ctttgtcaggccgacaatcataattatgtgttgtgtcgtcatacaaagccactgtccgct
ttgactcgcgaaacgttacaaaacgagctgaaaaattgtcaggtcctgtttgacgatggc
gagacgccagttgtgtactctcagttgccattctatcaccttaatgaatttggcttaaca
cttgagtttaaattgaacaactttattcaagtaaatcaatctgtaaacgaagcaatgctg
cgccaagccacagactggctacagctgagtaacgatgaaagtgtgctcgaccttttctgt
ggggtgggaaatttctctttggtgctcgcaaaacaagcaaaaaatgtgattggcgtagaa
ggtgaagcgcaatcggttgcaatggctcagcaaaatgcgcaaactaatcaaatcagtaat
gttcagtttcactgttttgatctaactcagtcgattacagaagctgcttggttcgacgca
aatctggatgtgttggtacttgacccgtcaaggcctggtgcacttgaggttctacagcaa
ttaccgttgacgcagtttacccgtattttatacgtgtcatgtgatcctgtgacactggcg
cgcgatgctttggtaatagcacaggcaggctttgaattagagaagcttggcttaatgaat
atgtttgtccacacgggacatatcgaaaccatggcgctgtttaaaaaacagtgtaaataa
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