Pseudoalteromonas maricaloris SCSIO 43202: CTT31_10920
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Entry
CTT31_10920 CDS
T08529
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pfli
Pseudoalteromonas maricaloris SCSIO 43202
Pathway
pfli03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CTT31_10920 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfli03400
]
CTT31_10920 (recD)
Enzymes [BR:
pfli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CTT31_10920 (recD)
DNA repair and recombination proteins [BR:
pfli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CTT31_10920 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
SH3_13
Helicase_RecD
Viral_helicase1
AAA_22
RecD_N
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
UvrD_C
AAA_28
NTPase_1
CbiA
AAA_24
TrwB_AAD_bind
DEAD
T2SSE
SRP54
Motif
Other DBs
NCBI-ProteinID:
USE69619
LinkDB
All DBs
Position
1:complement(2505996..2507873)
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AA seq
625 aa
AA seq
DB search
MSQLSMDFEAFDHHSFITLLLEHKRVGKADIALAKLLNQQGYDDHFYVFLLLLIAHGRQH
SCLELDSINYQDPFELSYAVADGSVELSPFSSTGIAFAALAQHPAIGEDKPLRLYGNKLY
LARLANYEARLAGHFEMLAKADVTLDEAKLSALLASFFPASEEDIDWQKVACTLAIIKRF
CVITGGPGTGKTTTVTKLLAILQSLYNSAPLTIKLVAPTGKAAARLSESIIGAKARLNLP
PALADLLPEQAQTIHRLLGVIPNSVHYRHNQDNPLHVDVLIVDEASMVDLSLMAKLVDAL
PKHARLILLGDKDQLASVDTGNVLSDLCENLALGQAPHYSQALKAKLVELSKQNLPESGD
TSADFMLEDNLAFLQKSHRFDSRSGIGQLAFAVNSNNKRQLDSVLGQGYSDIQHHELNSE
TYNALIARAAEQYQRYLLAIHHGESEAIIHSEFASYQLLAAVREGPYGVNELNRRIELKL
SQMGLVQPTGRFYVGMPIMITQNDYQLKLFNGDIGIILRDEQGELKASFIDEQGSIRRFY
PARLPSFDRVYVMTIHKSQGSEFAYTAMILPPIQRAQQGINRQLIYTGITRAKQQFELVA
QYKVLVQGMNRSVSRSSGLRSRLSN
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagccagttaagtatggactttgaggcatttgaccatcatagctttataacgttattg
cttgaacataaacgagttggtaaagccgatatcgcgttagccaagttgctgaatcagcaa
ggctacgacgatcacttctatgtatttttactattattaatcgctcatggacgtcagcat
agttgtttagagttagacagtattaattaccaagatccgtttgagctcagctacgcggtt
gcggatggatctgtagagttatcgccattttcaagcacaggtatagcctttgcagcgctt
gcacagcatcctgcgatcggtgaagataagccgcttcggctatacggtaataagctctac
ttggcgagattagcaaattatgaagcaaggcttgctggacactttgaaatgttggcaaaa
gccgatgttacgctggacgaagcaaaactgagtgcactgttggcgtcgttttttccagcc
agtgaagaagacattgattggcaaaaagtggcttgtacgcttgctattattaagcgattt
tgtgtcatcacgggtggtcccggtacaggaaaaaccacgacggtcacaaaactgcttgct
attttacagtcgctttataacagtgcgccgttgaccatcaagctagtagcgccgaccggc
aaagcggctgcgaggctcagtgagtcaattattggtgcgaaagcgaggttaaacctgccg
ccagcgcttgctgatttactgccggagcaggcgcaaactattcatcgcttattaggcgtt
attcctaatagcgtgcactatcgtcataatcaagataacccgctgcatgttgatgtgctg
attgttgacgaagcatccatggtggacttatcgcttatggctaagctggtggatgcacta
ccaaaacatgcacggcttattttgcttggcgataaagatcagctcgcatcggtagatact
ggtaacgtactcagcgacttatgtgaaaacttagcgcttgggcaagcaccacattacagt
caggcactgaaagcaaaactagttgagttgagtaaacaaaacttgcctgagtcgggtgat
accagcgctgactttatgttggaagataatctggcgtttttacaaaaaagtcaccgtttt
gacagtcgaagtgggattggtcagttagcatttgccgtaaatagtaacaataagcggcaa
ttagacagcgtgctggggcaaggttatagcgatatacaacatcatgaattaaatagtgaa
acctacaatgccctaattgccagagcggcggagcaataccaacgataccttcttgccatt
catcatggtgagagtgaggccataattcatagcgagtttgccagttatcaattgcttgcg
gcagtgagagaaggcccttacggtgtgaacgagttaaatcgcagaatagagcttaagctt
agtcaaatgggattagtgcaaccgacagggcgcttttacgttggtatgcccattatgatc
acccaaaacgattaccagttgaaactgtttaacggcgatatcgggatcattttacgcgat
gaacagggtgagctaaaggcatcatttattgatgaacagggcagcattaggcgcttttat
cctgccagattgccgagctttgatagagtgtacgtaatgactatccacaaatcgcaaggc
tctgagtttgcttacacggcaatgatattaccacccattcaacgtgcgcagcaggggata
aatcgccagcttatttatactgggatcacccgagctaaacagcagtttgaattggtggcg
caatataaagtattagtgcagggtatgaatcgaagtgtaagtcgcagtagtggtttgcga
agtcggttatcaaattaa
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