Pseudoalteromonas maricaloris SCSIO 43202: CTT31_12695
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Entry
CTT31_12695 CDS
T08529
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfli
Pseudoalteromonas maricaloris SCSIO 43202
Pathway
pfli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTT31_12695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfli03019
]
CTT31_12695
03009 Ribosome biogenesis [BR:
pfli03009
]
CTT31_12695
Enzymes [BR:
pfli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CTT31_12695
Messenger RNA biogenesis [BR:
pfli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CTT31_12695
Ribosome biogenesis [BR:
pfli03009
]
Prokaryotic type
rRNA helicases
CTT31_12695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
P-loop_SecA
AAA_22
PMC2NT
Motif
Other DBs
NCBI-ProteinID:
USE69933
LinkDB
All DBs
Position
1:2870013..2871827
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AA seq
604 aa
AA seq
DB search
MSEPVTFESLDLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNQVDASVKQPQILVLTPTRELAIQVAEAFQQYAKFTKGVEVLALYGGQSYGIQLSA
LRRGAQIIVATPGRLIDHINRKTIDLSGLNALVLDEADEMLRMGFIDDVESIMEKTPEEK
QTCLFSATMPKQIQSICNKYLDNAEQVKITPRNSTVSTIEQVYWRATAHKNKAIVRFLEA
EDYDGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGLLDIVIAT
DVAARGLDVERLSLVVNYDIPQDCEAYVHRIGRTGRAGRQGKAILFVKNNERYLLKNIMR
HTRSDIAQVELPSAKVVEEKRIGALETKISTALEHKDIEFFSKVASGLAQKLELSQEDLA
AALLCLAQQQTPLKVEDIQIQQRERRERDDRRGERRERDGSRGERGERKSRSRDRASGPM
DTYRIEVGRDHGVQVKNIVGAIANEADISSKFIGEIRLFNEHSTVQLPQNMPSDVLSHFK
SVHICQRPMNMTKSTHPADQGQGRGEEQRDRKRSFKDPRSGGGDKRRPEGQRREKRERKE
ISFS
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagttacgtttgaatctttagacctttctcctgcaatcttaaaagcagtc
gaagagctgggatataaaacaccttctgagatccaagctcaatgtataccgttattgcta
gaaagaaaagacgtactgggactagcgcagacgggtacaggtaaaacggcagcatttgca
ctgccattgttaaaccaagtagacgcatccgttaaacaaccgcaaattcttgtgcttacg
ccaacgcgtgagctagctattcaagttgctgaagcatttcagcaatatgctaaatttact
aaaggcgttgaagtactagcgctttatggtggtcaaagctacggcattcagctaagtgct
ctacgccgtggtgcccaaattattgtggcaacaccaggtcgtttgattgaccacatcaat
cgcaagacgattgacctttctggtctaaacgcacttgtacttgatgaagcagatgaaatg
ctacgcatgggctttatcgatgatgttgaaagcatcatggagaaaacaccggaagagaag
caaacttgtttgttctctgcgactatgccaaagcagatccaatcaatctgtaataaatat
ttagataacgctgaacaagttaaaatcactccgcgtaactctacagtatctacgatcgag
caagtttactggcgtgcaactgcacacaaaaacaaagctatcgtacgtttcttagaagcg
gaagattacgacggtgctatcgtgttcgtacgtacacgtaatgacactgttcagcttgca
gagctactagagcgtgaaggcttctcagctgcaccgctcaacggcgacatgaaccagcag
gcgcgtgagcgcacagtagaccgtctaaagagcggcttactagatatcgttatcgcaact
gacgtcgcggcacgtggtcttgacgtagagcgtctaagccttgttgttaactacgatatc
ccacaagactgtgaagcttatgttcaccgtattggtcgtaccggccgtgctggtcgtcaa
ggtaaagcaatcttgttcgttaagaacaacgaacgttatttacttaagaacatcatgcgc
catacgcgctctgatattgcacaggttgaattaccaagtgcgaaagtcgttgaagaaaag
cgtattggtgcattagagaccaagatctctacagcgcttgagcacaaagacattgagttc
ttctcaaaagtggcatcaggccttgcacaaaagctagagctgagccaagaagacttagca
gcagcgctattgtgtcttgcacagcagcaaacgccgctgaaagttgaagatattcaaatt
caacagcgtgagcgtagagaacgtgacgaccgtcgtggcgagcgtcgcgaaagagatggt
agccgtggtgagcgtggtgaacgcaaatctcgtagccgtgaccgtgcatcaggtccaatg
gatacttaccgtatcgaagtgggtcgtgaccatggtgttcaagttaagaacatcgttggt
gctatcgcaaacgaagcggatatctcaagcaagttcatcggtgaaatccgtctgttcaat
gaacacagcacggttcaattgccgcagaatatgccaagtgatgtacttagccacttcaag
agtgttcacatctgtcaacgccctatgaacatgactaagagcactcacccagctgaccaa
ggtcagggcagaggcgaagagcaaagagaccgtaagcgtagctttaaagacccacgtagt
ggcggtggcgataaacgccgtcctgaaggtcaaagaagagaaaaacgcgaaagaaaagaa
attagcttttcttaa
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