Pseudoalteromonas maricaloris SCSIO 43202: CTT31_15530
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Entry
CTT31_15530 CDS
T08529
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pfli
Pseudoalteromonas maricaloris SCSIO 43202
Pathway
pfli02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfli00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CTT31_15530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfli03021
]
CTT31_15530
Transcription machinery [BR:
pfli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CTT31_15530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
USE70447
LinkDB
All DBs
Position
1:3486558..3488408
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AA seq
616 aa
AA seq
DB search
MDQSPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDIIDSDQVEDIISMINDMGIQVSENAP
DADELMMQETTTDEDAAEAAAAALATVEKEIGRTTDPVRMYMREMGTVELLTREGEIQIA
KRIEEGINQVQISVAEYPEAITYLLEQWDKYEAEEMRLSDIVSGFFDPNAIEEDEAPISA
THIGSELSDEDLDDEDDDEDDDDDDSEEGDSGPDPEEAREHFEQLRTLYNKAREIFESKG
RSHPDAKAAIQEIGDHFRTFKLVPKQFDRMVNNMRDMMDKVRVQERIIMKQAVQIAKVPK
KVFVKHFANNETDTAWIDAEIASGEKHSAKLAEVKPEIERCVNKLKAFEDSTGLSIERIK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPS
PEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIESPIDSATMES
LRGATNEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSDLLKSFLDVKG
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatctcctcagtcacaactcaaacttctgattcagaaaggtaaagagcaaggt
tatttaacttttgcagaagttaacgatcatcttccacaagacatcatagactcagatcag
gtagaagatatcatcagcatgatcaacgatatgggtattcaggtctctgaaaatgcgcct
gatgctgatgagttgatgatgcaagaaacaacaacagatgaggatgctgcggaagcagcg
gctgcggctttagcaacagtagaaaaagaaattggccgcacaactgaccctgttcgtatg
tacatgcgtgaaatgggtacggttgaacttctaactcgtgaaggcgaaatccaaatcgct
aagcgtattgaagaagggatcaaccaagtacaaatttctgtcgcagaataccctgaagct
attacttacctgctagagcaatgggacaagtacgaagcagaagaaatgcgcctaagcgac
attgtttctggtttctttgatcctaatgctatcgaggaagacgaagcaccaatttcagca
acacacatcggttctgagctaagtgatgaagacttagatgacgaagatgatgatgaagat
gatgacgatgatgactcagaagaaggcgattcaggtccagatcctgaagaagctcgtgag
cattttgaacaacttcgtacgctgtacaataaagcgcgagaaatttttgaaagtaaaggt
cgctcgcacccagatgcgaaagctgcaattcaggaaatcggcgatcacttccgtactttc
aagttagttcctaagcaattcgaccgcatggtaaataacatgcgcgacatgatggacaaa
gtgcgtgttcaagaacgcatcatcatgaagcaagcagttcagattgctaaggttccaaaa
aaggttttcgttaagcactttgctaacaatgaaaccgataccgcatggatcgatgctgaa
attgcatcaggtgaaaaacactcagcaaaacttgctgaagtaaaacctgaaatcgagcgt
tgtgttaacaagcttaaagcgtttgaagatagcacaggtcttagcattgagcgtattaaa
gacatcaaccgtcgtatgagtattggtgaagcaaaagctcgccgtgcgaagaaagaaatg
gttgaagcgaacttacgtcttgtaatttcaatcgctaaaaagtataccaaccgtggtctg
cagttcttggatctgatccaagaaggtaacataggcctgatgaaagcggttgataaattt
gaataccgtcgtggttataagttttcaacatacgcaacgtggtggatccgtcaggcgatc
acgcgctcaattgcggatcaggcaagaactatccgtattccagtgcatatgattgaaaca
atcaataagctgaatcgtatctctcgtcaaatgctacaggaaatgggccgtgagccaagt
cctgaagaattggcagaacgtatgatgatgcctgaagataagatccgcaaagtgttaaaa
atcgctaaagagccaatctcaatggagacgccaattggtgatgatgaagattcacatctt
ggtgactttatcgaagacactactatcgagtcgccgattgattcagcaacgatggaaagt
cttcgtggcgcaaccaacgaggtacttgcaggccttaccgctcgtgaagctaaagtacta
cgtatgcgttttggtatcgatatgaatacagaccacacgttagaagaagtgggtaaacag
tttgatgtaacacgtgagcgtattcgtcagattgaagctaaagcgctacgtaagctgcgc
cacccttctcgctcagatctattaaagagctttttagacgttaagggctaa
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