Pseudoalteromonas maricaloris SCSIO 43202: CTT31_16535
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Entry
CTT31_16535 CDS
T08529
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pfli
Pseudoalteromonas maricaloris SCSIO 43202
Pathway
pfli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CTT31_16535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfli03400
]
CTT31_16535
DNA repair and recombination proteins [BR:
pfli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CTT31_16535
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CTT31_16535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_22
nSTAND1
RsgA_GTPase
nSTAND3
AAA_23
DnaJ_CXXCXGXG
NACHT
Viral_helicase1
NTPase_1
cobW
T2SSE
IIGP
AAA_25
DUF1924
DUF2972
Motif
Other DBs
NCBI-ProteinID:
USE70638
LinkDB
All DBs
Position
1:3707339..3710161
Genome browser
AA seq
940 aa
AA seq
DB search
MDKIEVRGARTHNLKDISLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC
PTHDLPLAAQTISQMVDTVLALPEGSKLMLLAPVVKNRKGEHVKLLEELASQGFIRARID
GEVCDLSDPPTLELQKKHTIEVVVDRFKVKAGLEQRLAESFETALDLADGIAQIAYMDDS
EADELIFSANFACPTCGYAMSELEPRLFSFNNPAGACQSCDGLGVKQYFDPKRVVQNPEL
SLSGGAIKGWDKRSFYYFQMLSSVAEQYGFDLETPFQDLPSKFQKVVLEGSGKTKIAFKY
RNDRGDLITRNHEFEGVLNNMNRRYRETESSSVREELAKYQTSQACPSCHGSRLREEARH
VFIGSTNLPTVTTMSIGEASQFFIDLALTGQKAQIADKILKEIRDRLSFLINVGLNYLSL
ERSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNDRLLKTLTHLRDLGNT
VIVVEHDEDAIRAADHIIDIGPGAGVHGGYVVAEGTRDEIMQSKDSLTGQYLSGEKCIEV
PAQRHQCDDKWLELKGATGNNLKSVDLKVPVGLMTCVTGVSGSGKSTLINDTLFKLAHQE
LNGATTQEAAPYESVHGLDHFDKVIDIDQSPIGRTPRSNPATYTGIFTAIRELFAGTQES
RSRGYKVGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCTGKRYNRETLEVLYK
GKNIHEVLEMTVEDAREFFDKIPAINRKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKLA
RELSKRDTGKTLYILDEPTTGLHFHDIQQLLAVLHRLRDHGNTVLVIEHNLDVIKTADWI
VDLGPEGGAGGGQILVSGTPETVADFAASHTGKYLKPLLS
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggataaaatagaagttaggggtgcccgcacccacaatttaaaagacatttcactcact
attccaagagacaagttgatagtgatcacgggtctttctggctcagggaagtcgtcttta
gcatttgacaccttatacgcagaaggccagcgtcgttatgttgagtctttgtctgcgtac
gcgaggcagtttttatcgctgatggaaaaaccagatgtggatcacattgagggcttgtct
cccgcgatttccattgagcagaagtcgacttctcacaaccctcgctcaaccgtgggaacc
attaccgaaatatacgactatttaaggttactctttgctcgagtgggtgaaccgagatgc
cctacgcatgatttaccgttagccgcacaaactatcagccaaatggttgatactgtattg
gcactcccagagggtagcaaactcatgctacttgcaccggtggtgaaaaaccgtaaaggt
gagcacgtaaaactgttagaagagcttgcgagccaaggttttattcgtgcgcgtattgat
ggcgaggtatgcgatctctcagatccacccacgctagagttacagaaaaaacataccata
gaagtcgtggtggatcgtttcaaagtcaaagcagggcttgagcagcggttagccgaatct
tttgaaaccgcgcttgatttggctgatggcattgcgcaaatcgcctatatggatgatagc
gaggcagacgaactgatcttctcagccaactttgcctgtccaacttgtggctatgccatg
agcgaacttgaaccacgattgttttctttcaataaccccgcaggtgcgtgccaaagctgt
gatggtttgggggtaaagcagtattttgatcccaaacgtgtggtgcaaaacccagaacta
agcttgtctggcggtgcaatcaaagggtgggataaacgcagtttttactattttcagatg
ttaagctcggttgctgagcaatatggatttgacttagaaacgccatttcaggatctgccg
agtaagtttcaaaaagtggtattagaaggctcaggcaaaactaaaatcgcgtttaagtat
cgtaatgacagaggcgatcttatcactcgcaatcacgagttcgaaggcgtgttaaacaat
atgaatcgccgttatcgggaaacggagtcaagttcagtaagagaagagctcgccaaatat
caaaccagccaagcgtgtccaagttgccatggctcacgcctgcgcgaggaagctcgccat
gtgtttatcggctcgaccaacctgccaaccgtaacaacgatgagtatcggcgaagccagt
caattttttatcgacttagcactcacaggccaaaaagcacaaattgcggacaaaatactc
aaagagatccgcgaccgtttatctttcttgatcaatgtaggcctaaactacctctctttg
gagcgtagtgctgatactttatctggcggtgaagctcagcggatccgtcttgcaagccaa
attggcgccggcctcgtgggggtaatgtacgtactggatgagccttcaattggtctacat
cagcgcgataacgaccgtttacttaaaacactcacgcacctaagagatcttggcaacacc
gtgattgtggtagagcacgacgaagatgccattcgtgcagccgatcacatcatcgatatc
ggtccaggcgcaggcgtacacggcggctatgtcgtcgctgagggaactcgcgatgagata
atgcaaagtaaagactcattaacgggtcaatatctcagtggcgagaaatgcattgaagtt
ccagcgcaacgtcatcaatgtgatgacaagtggcttgaacttaaaggtgcaacgggcaac
aacctaaaaagtgtcgacttaaaagtgcctgttggtctcatgacctgcgtaactggagta
tctggttcgggtaaatctaccctcattaatgacaccctattcaagcttgcccatcaggaa
ttaaacggtgcaacaacgcaagaagctgcaccatatgaatcagttcatgggctagatcac
tttgataaagttatcgatattgatcaaagtcctatcggtcgcacaccacgttcaaaccca
gcaacttataccgggatctttactgctatccgtgaactatttgcggggacacaagagtcg
cgttcacgcggttataaggttggccgctttagttttaatgttaaaggcggtcgctgtgag
gcctgtcaaggcgatggggttatcaaggttgagatgcacttcctaccggatgtctatgtt
ccttgcgatgtctgtactggtaagcgctataaccgtgaaacactggaagtgctgtataaa
ggtaaaaatatccacgaagtgttggaaatgaccgttgaggacgctcgagaattttttgat
aaaattcccgcaatcaatcgcaaactacaaaccttaatggacgttggcctctcctacatt
cgcttggggcaagccgccacgaccttgtccggtggtgaagcgcagcgtgttaagctcgct
cgtgaactatcaaaacgagataccggtaaaacactctacattctcgatgagccaaccaca
ggtctacacttccatgatattcagcagctactcgcggtattacaccgtctacgcgatcat
ggtaatacggtgctggttatcgagcataatctagatgtcatcaaaaccgcggactggatt
gtagacttaggtccagagggaggagcaggaggtggtcaaatactcgtctcaggtacgcct
gaaacggtggctgactttgcggcttcgcatacgggtaagtaccttaagcccttattgtct
taa
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