Pseudoalteromonas maricaloris SCSIO 43202: CTT31_21770
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Entry
CTT31_21770 CDS
T08529
Name
(GenBank) exonuclease SbcD
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pfli
Pseudoalteromonas maricaloris SCSIO 43202
Brite
KEGG Orthology (KO) [BR:
pfli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfli03400
]
CTT31_21770
DNA repair and recombination proteins [BR:
pfli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CTT31_21770
Archaeal homologous recombinant proteins
CTT31_21770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
ABC_tran
TMF_DNA_bd
AAA_22
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
USE71711
LinkDB
All DBs
Position
2:888260..891919
Genome browser
AA seq
1219 aa
AA seq
DB search
MKLEKILITNLASIESAEVDFTAAPLKDTGLYAITGDTGAGKSTLLDAVCLAFYGKTARL
KSDDKEKVAFNGDNIKLNDPRNLLRRGCVAASASVVFIAQDSKRYQAIWSVERARKSPKG
NLKTATIELFSLPDMTLVCEKKKETEQKIEQLVGLNFEQFTRAVLLAQHEFSAFLKAGGD
ERAQLLECLTGTEKFSNIGKAVFEAHKQKKVELQSLQDRLGQIVLLSPEQLTELEAQKLG
LLDTRNRQQETSTKLQAQLQWLADVELRKQKIAEVEHTLKTLEQQIEEGKPQQEYAQQVL
KANEMRDNREQHELADKRVAQLSQERLALQQQDFASAIATLKAKQQQLEQQLITQQANFV
KLEPSFNTIRILDEKLSLHKAQERETKPYLDKHANLIAQHEAAIQKYQVQQGEIATELQQ
LEQEQASLHSVSNIAGQWSVVQPQFDDLQKYQQQRNDHETQLQKLPSEQQALGTQLSKHE
AEVQHLQKVYDTEASALSALKEALAPLTRQDLNLALQNWSLCAQAYRSIEEGDALLHQLR
SQQTQHHIGLERLEILIRDTKQQDELSKQRLALTRDNLEQVQLRASERISDLRAQLRAGQ
ECMVCGSKEHPYGVEHIDAHWEQLLSDFRSQYQAAEQAREQVLQRYNQQVGEKERENALW
QSVTQEIAHCTKQINENRARLDALSDEYKVGSAEQAELQLVSIQSRLNELSKLRNNIDRQ
WQSVQQAQQHLEQAKHKGQALQQQHHDLGNHIAFLRTEYEQLSQTVDALRNRLEALISDK
SWWQNFDSSPQAAISQLKTGVQTWLKTTERTDALTANKVQLEHQLHLASQQKQDEAQRLE
ELEHTLLQHQQNIERLNRERAEYLPQQHTRLDDWIAELKQQEQQSREQITQTQLALSQTE
AQREKTQHSLTQLEKQIAEQTSRLQQLDARFEQWLLDQQGQLNKVKVLALLEVSLDEARA
NLEKCAQVQQTFQNTKLQLSHQREELSQLENKYPDGVDSAQVKLSHAETTQGLEQTQNQL
LQVQSALEVDAQNKQQFSLQAASLAQLQQDYEQWHLLDKLLGDATGKKLRNWAQTQTLKI
LLQYANQQLHTLSRRYLLTNIEQSLEIAVIDKDMADEQRSVNTLSGGESFLVSLSLALGL
AALSSNKVQIHSLFIDEGFGTLDPETLGVAIDALDALQSQGRKVGVISHVAQMSERIATR
IHVNKQPGGYSSLNLVPQT
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttgaaaaaatattaatcaccaaccttgcctctatagaaagtgcagaagtcgac
tttactgcggcaccactcaaagacaccggtctttatgccattactggtgatacaggggcg
ggaaaaagcactttactggatgcggtttgtcttgcattttatggcaaaaccgcacggtta
aaatcggacgacaaagagaaagttgcctttaatggcgataatattaagttaaacgacccg
cgaaacctattgcgtcggggttgtgttgcggcatctgctagcgtggtttttattgctcaa
gatagcaaacgttatcaagctatttggtcagtagagcgcgctagaaaaagccctaaaggt
aatttgaaaaccgccactattgagttgttcagcctacctgatatgaccctagtctgtgag
aagaaaaaagaaacagaacaaaaaatcgaacagctagtcgggcttaactttgaacagttt
actcgagccgtgctgcttgctcagcatgaattctccgcgtttttgaaggctgggggagat
gaacgggctcagttactagaatgtcttacgggtaccgaaaagttcagcaatatcggtaaa
gcggtttttgaagcgcacaaacaaaagaaagtcgagctgcaatccctgcaagataggcta
ggtcaaattgtgcttttgtcaccagagcagcttaccgagcttgaagcacaaaagttggga
ttgcttgatacaagaaatcgacaacaagaaacaagcacaaagctgcaagctcagctgcaa
tggctcgcggatgtcgagctaagaaagcaaaaaatagctgaggtggagcacacgctaaaa
acgcttgagcagcaaatagaagagggaaagccacagcaggaatatgcgcagcaagtctta
aaagccaatgagatgcgtgataaccgtgagcagcatgagctggcggataaacgcgttgcg
cagctatctcaagagcggctagcattgcagcaacaagattttgcatccgctattgcaacg
cttaaagcaaaacagcagcaactggaacagcagcttattacgcagcaagccaattttgta
aagttagaaccaagctttaataccattcgtatattggatgaaaagctgagcctacacaaa
gcgcaagaacgagaaactaagccctatctcgacaagcacgccaatcttattgcgcaacat
gaagctgcgatacagaagtatcaagtgcaacaaggcgagatcgctactgaattacagcag
ctagagcaggagcaagcgagcttgcactcagttagcaatattgccgggcaatggagcgtg
gttcagcctcaattcgatgatctgcaaaagtaccaacaacaacgtaacgatcatgaaacc
cagttgcaaaaattaccgagcgaacagcaagcgctaggtacacaattgagcaaacatgag
gctgaggtacagcacctacaaaaggtttacgacaccgaagccagcgcgctctcagcgtta
aaagaagcactcgcacctttgactcgacaagacctaaatttggcattgcagaactggtct
ctatgcgcgcaagcctatcgtagtatcgaagaaggggatgccttgctgcatcagttacga
tcgcaacaaacgcaacatcatattggcttggaaaggcttgagatactgatccgagatacc
aagcagcaagacgagttgtctaagcagcgtttagccctaactcgtgataacttggagcaa
gtgcagttacgcgcaagtgagcggatcagcgatttacgcgctcaactgcgggcaggacaa
gaatgcatggtgtgtggctcaaaagaacatccttatggtgtggagcacatcgatgcccac
tgggaacaactactatcggattttcggtctcagtatcaagctgctgagcaagctcgtgaa
caagtgttgcagcgttataatcaacaagtcggtgaaaaggagcgtgagaatgcgctatgg
cagtcagtcactcaggaaattgctcactgcactaagcaaataaatgagaatcgcgctcga
ctagatgcattgagcgatgagtataaagttggcagcgctgagcaagctgaattgcaactc
gtgagtattcagtcacggctaaatgaactatcaaagttacgcaataatatcgaccgccag
tggcaatcggttcagcaggcacaacaacacctcgagcaggctaaacataaagggcaggca
cttcagcagcagcaccatgatttaggtaatcatattgcctttttgcgaaccgaatatgag
cagctatcacagacagtagacgccttacgcaatcgacttgaagcgttaatttccgataag
tcgtggtggcaaaactttgattcatctcctcaagctgccattagccaacttaaaacgggg
gtgcaaacttggctaaaaaccaccgagcgtacagatgcgttaacggcgaataaagttcag
cttgagcatcaattacatcttgccagtcaacaaaaacaagatgaggcgcagcggcttgag
gaattagaacatacgcttttacaacatcagcagaatattgaacgcctcaatcgcgaacgt
gctgaatacttaccacagcagcacaccagattagatgattggattgcagagctgaagcag
caagaacagcaaagccgagagcagatcacacaaacccagttggcgctgagccaaaccgaa
gcacaacgtgaaaagacccaacacagtctgacccagctagaaaagcaaattgccgagcaa
acatcgcggttgcagcaacttgatgcgcgctttgaacaatggttgctcgaccagcaaggg
cagctaaacaaagtaaaagtattagcgttacttgaggtttcgttggatgaagcgcgagcg
aatctagaaaagtgtgcgcaagttcagcaaacctttcaaaacactaagctgcagcttagt
catcagcgtgaagaactcagccaacttgaaaataagtaccctgatggagttgacagtgca
caagttaaactaagtcatgccgagacgacgcaaggacttgagcaaactcaaaatcagttg
ctacaagtgcaaagtgcattagaggttgatgctcagaataaacaacaattctctttacaa
gcggcaagtctcgctcagttgcaacaagactacgagcaatggcatttgctagataagtta
ttaggtgacgcaacaggcaagaagttgcgtaattgggcgcaaacgcaaacgctaaaaatc
ttattgcagtatgctaaccagcaattgcatacgctttctagacgttatctgcttaccaat
atcgagcaatctttagaaattgcggtcatagataaagatatggctgacgaacaacgtagc
gtcaacaccttatctggaggagagtccttcttggtatctttatctttagcacttggactt
gctgcgctttcgtcaaataaagtgcaaatacattcattattcattgatgaagggtttggt
acgttagaccccgagacgctaggtgtcgcgattgatgcactagacgcgttgcaatcacaa
ggccgaaaggttggagtgatctcgcatgttgctcagatgagcgagcggattgccacccga
atccatgtgaataaacagccgggaggctactcatctttaaatttagtaccacaaacataa
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integrated database retrieval system
