Ptychodera flava: 139114239
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Entry
139114239 CDS
T10724
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pfll Ptychodera flava
Pathway
pfll04820
Cytoskeleton in muscle cells
Brite
Glycosaminoglycan binding proteins [BR:
pfll00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139114239
BRITE hierarchy
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Ortholog
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GFIT
Other DBs
NCBI-GeneID:
139114239
NCBI-ProteinID:
XP_070531917
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Position
16:complement(20183697..20299464)
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AA seq
1707 aa
AA seq
DB search
MAGTWMYNRHKLSQWDRQTLVLLLISLFAGSQCTKVPIPPGAQDVLEVAGIRNFPKGVKS
AEGFCSDRPDNGRALAPLYTNDVAFELTSDAQISIPTTELFDEFPEDFSIIATLKPSKGL
SSYLLVVYNRLGTPQVSLEVGTQIIFSYDDQKAPKSTIIFDVNVADDDWHRIGLMIAGNT
MSILVDCSYNETKVLDRKLDVKIDTAGIVVVGRQLLRQGSYEGLVQQLIMSPRYYDAFDY
CSYYTPDCDFPLPAFPPNQEAEDGSTPDGPVPGPDGGVKPGPDEGGGGGVKPGPGENGGG
GGLKGQKGEPAVVEPGVYIPGPPGPPGPPGPSGQLGYDGPPGPLGNKGQKGEPGEDGIDG
LRGFPGAPGPTLLIPSMITSGNGESKGPDNAAMAAFTNLLDTQRSALQGPSGPVGLTGKT
GPIGYPGPSGLKGEEGDPGPMGPVGPLGPTGLDGKSGKRGRAGKPGLRGNSGVTGSKGDR
GFDGLPGLSGQKGQRGGPGQAGPLGPPGVRGEPGDDGPTGRTGLQGDSGPRGLPGQRGPQ
GLQGMPGIPGGDGPEGLKGAPGPVGVPGMPGARGFSGQVGPPGPQGPMGAPGDPGNEGKP
GLPGISGVDGPPGHNGVDGPPGDKGETGTRGPQGPLGFPGTRGIKGDRGTRGLSGLKGSK
GSEGLQGFKGDLGPKGNNGPAGEPGVRGPEGDIGTKGNRGVQGEPGLAGPTGFKGSMGLP
GLPGYPGRVGQKGTLGPIGRRGRRGLKGESGKTGMPGELGEPGPRGQPGQRGRRGPRGQL
GPKGSEGQEGPGGIQGERGPPGAPGSRGFEGEKGPPGPSGLPGPIGHPGERGDAGFGGKT
GPPGPPGVIGPQGPPGEKGPMGERGSPGPGGMPGEAGIPGDMGKEGAQGPPGPGGNPGPI
GPPGVQGFPGERGLPGPEGIQGLKGDDGPEGLPGPQGAQGPPGVPGETGPIGLPGQPGPP
GSGGPTGDKGAIGEDGPMGPMGRDGSPGARGLPGAVGPQGPPGEDGDSGESGPPGIKGVK
GGRGLSGPPGNPGERGNIGIPGAPGATGEAGRPGIMGPQGAKGNDGQRGPRGDSGPIGLQ
GMPGAIGQKGEQGDQGPRGLQGPPGQPGKTGHPGIAGGRGPNGPPGPRGDRGEKGMQGER
GLAGAQGVAGVPGITGFKGEKGEDGSPGDQGVAGPRGLQGEPGSPGPIGPQGLPGPQGPR
GPAGAIGKDGSKGEQGELGDEGLPGPPGPGGDIGLPGPRGPPGPPGINGMEGDQGPKGSQ
GDKGDTGTMGLMGPSGPAGRPGPPGNEGPRGSPGPEGIPGDQGALGPSGLPGPMGMPGQK
GDAGDRGVKGEKGDKGELGLTGPEGPPGEKGEPGLAGVEGQMGPKGNQGLPGPPGPLGPD
GIPGPPGTEGRGGEKGDKGEDGAKGDTGPSGPPGPPGPPATIENYQQLVSMGLVGLTSDM
LRDEAERRRRDTQADNGLPPDYSDGLAEIFGSLEALKVEIERMKRPVGSRFNPARTCKDL
YMCHENFPDGMYWIDPNQGCIKDAIEVFCNFTAGGETCIMPDEETRSHRASFFNDDDDQE
DDSSVPAKGFRKARQGEWFSEFKQGFQISYSGVGVVQMTFLRLLSASARQNFTYNCYNTP
AWYDRVNDSYDSAVSLMGANEEEFAHGTAYVPDVLKDGCKDKPNKSKTVFQIETTKLNQL
PIIDFMPGEFGGRDQRFGFEAGPVCFD
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atggcagggacttggatgtataaccggcataaattaagccaatgggacaggcaaacgctc
gtattgttactaatttcactttttgcaggtagccaatgtacaaaagtgcccattccacca
ggtgcccaagatgtgctcgaagtagccggaattcgtaatttccccaagggagtcaagagc
gccgaaggattctgctcggatagaccggacaatggcagggccttggcgccactttatacc
aacgacgtagcattcgagttgacgtccgacgctcagatcagtataccgacaactgaactg
ttcgatgagtttccagaagatttctcaatcatagcaacgctgaagccatccaagggtctc
agctcatatttactagtagtgtacaatcggcttggcacgccgcaggtctcactggaagtc
gggacacaaatcatcttctcgtatgacgatcaaaaagctccaaaatcaacgattattttc
gatgtcaatgtcgctgacgacgactggcataggataggacttatgatagcaggaaataca
atgtctatactagtagactgttcgtacaatgaaaccaaagtcttagacagaaagcttgat
gtgaaaatcgacacagccggtatagtcgtcgtcggaagacagcttcttcggcaggggtcc
tatgagggtttggtccaacaactgatcatgtcaccccgttactacgatgcttttgattac
tgttcgtactacactccagactgtgactttcccctcccggctttcccgccaaaccaagaa
gccgaagacggatcaactccagatggccctgtgcctgggccagatggtggcgttaaacca
ggaccagacgaaggaggcggcggcggcgttaaacctggaccaggtgaaaatgggggcggc
ggaggtctgaagggtcaaaaaggcgaacctgcagttgtggagccgggcgtgtatattcct
ggtccaccaggaccaccaggcccgccgggaccgtcaggtcagttgggctatgacggtcca
ccgggtccattgggaaataaaggtcaaaagggagaaccaggagaggatggtatcgacgga
ctgcgagggttcccaggtgctcccggcccaacgctactcatcccgagtatgataacatcg
ggcaacggcgagtccaaaggtcctgacaacgccgccatggctgccttcaccaatcttctc
gatactcaaaggagcgccctccagggtccatctggcccagtgggattgactggtaagacc
ggaccgataggttacccgggacctagtgggttaaagggagaggaaggagatccaggccca
atgggacctgttggaccattaggtcctacaggtttggatggaaagtctggcaaacggggt
cgagcagggaaacccggtcttcgaggtaactccggagttactggttctaagggcgacaga
ggtttcgacgggctgcccggattgtccggacagaaaggacaacggggaggccccggtcaa
gctggtcccctaggtccgcctggagtgcggggagagccgggtgacgacggaccaacggga
cgaaccggccttcagggagactcaggtccacgaggattgccgggacagaggggccctcaa
ggtttgcagggcatgccgggtattcccggtggagatggcccggaaggacttaaaggagca
cccggtccggttggtgttccaggaatgcccggagcaagaggattctccggtcaagtgggt
ccacctggaccgcaggggccgatgggagcacctggcgaccctggaaacgaaggaaaaccc
ggcttgccgggaatttcaggtgtcgatggaccaccgggacacaacggagttgatggcccc
cctggtgataaaggcgaaactggcacacgcggacctcagggacccctcggtttccctgga
acccgtggtattaaaggcgacagaggaacaagaggtctttcgggtttgaagggctcaaag
ggctcagaaggtttacaagggttcaagggcgacttgggaccaaagggtaacaatggacct
gctggagaacctggtgtgcggggcccagaaggagacatcggaacaaagggtaatagagga
gtacagggtgagccgggtctagcaggcccgaccggttttaagggaagcatgggactgccg
ggattaccaggctacccaggacgagttggacagaagggtacgttgggtcctattggacga
agaggtagacgtggtctcaagggagaatctggcaaaactggcatgcctggagaactcgga
gagcctggtccaagaggtcagccaggtcagaggggtagacggggcccgaggggtcaactt
ggaccgaagggatccgagggtcaagaaggaccagggggtatccagggcgagaggggacca
ccaggagctcccggttcaagagggtttgaaggtgaaaagggaccaccgggtccttctgga
cttcccggaccgatcggtcacccaggagagcgtggagatgcaggttttggaggaaagacc
gggccgccaggtccaccaggtgttatcggtccccagggtccaccaggcgagaaaggtcca
atgggagagagaggctcacctggtccaggtggaatgccaggtgaagcaggtatacctgga
gatatgggtaaagaaggcgcacagggtcccccgggtccaggtggaaatcctggtcccatt
ggcccaccaggcgtgcaaggattcccaggagagagaggtctgccaggaccagagggtata
caaggattgaaaggagatgatggaccggaaggattacctggacctcagggagcacaaggt
cctcccggagttcccggcgagactggacccattggccttccgggtcaacctggaccaccg
gggtcaggaggacctactggtgataagggagcaataggagaagatggtcctatgggtcca
atgggaagagatggcagtccaggagccaggggtcttcccggtgcagttggtcctcaaggt
ccaccaggcgaggatggcgattcgggtgaaagtggtccacctggtattaagggtgttaaa
ggaggtcgcggcctgtcgggtccaccaggtaaccctggcgaaagaggaaacatcggtatc
ccaggtgcaccaggagcaactggcgaagcaggaagacctggaattatgggaccacaggga
gcaaagggtaacgacggacagcgtggaccgagaggagattcgggtcctattggcttacag
ggaatgccaggtgctattggtcaaaaaggagaacaaggagatcaaggcccacggggtctg
cagggaccaccgggacagccgggaaaaactggtcatcctggtattgcgggtggtcgagga
cctaacggcccaccaggaccacgtggcgataggggagaaaagggtatgcaaggcgagcga
ggtctagctggagcgcaaggtgtggcaggagttccaggaataactggcttcaagggagag
aaaggagaggatggatcgcctggtgaccaaggtgtagccggacctagaggtctacaggga
gagccaggatcgccaggaccaataggaccacagggactgcccggtcctcagggaccacgg
ggacctgcaggtgccatcggcaaggatggtagcaaaggagaacaaggagaacttggagat
gagggtctacctggaccgcctggcccaggaggagacattggtttacctggtccaagggga
ccaccgggtccaccaggaattaatggcatggaaggagaccaaggtccaaaaggtagtcaa
ggagacaagggagacactggtactatgggattgatgggtccatctggacctgcgggtcga
ccaggtccacctggaaacgaaggtcctaggggatcacctggacctgagggtattccagga
gatcagggtgcccttggtccgtctggactgccaggcccaatgggcatgcccggacaaaaa
ggtgacgcaggcgatcggggcgtaaagggcgagaagggtgacaaaggtgagctcggttta
actggaccagagggaccacctggcgaaaagggtgaaccaggattagccggtgttgaaggt
cagatgggtccaaagggaaaccagggtcttcctggtcccccaggcccacttggaccagat
ggaattccgggacctccaggtacagaaggcaggggaggagagaagggagacaagggagaa
gatggagccaaaggtgacacaggaccatcgggaccaccaggaccaccgggaccaccagca
acaatagagaactaccagcaattagtgagcatgggcttagttggtttgaccagtgacatg
ttgagagatgaggcggaaaggcgaagaagagatacacaggccgacaacggtctcccacca
gactactctgatggtttggcggagatattcggatcactcgaggccttgaaggtcgaaatt
gagcggatgaagaggccggttggaagcagattcaatcccgcaagaacgtgtaaagatctt
tacatgtgccatgagaacttcccagatggtatgtactggatagatcccaatcagggttgc
atcaaggatgcaatcgaggtcttctgcaacttcaccgctggtggcgaaacctgtataatg
cccgacgaagagacaagatcgcacagggcgtcattcttcaacgatgatgatgatcaggag
gatgactcttcggtgcctgctaagggtttccgcaaggctcgccaaggggaatggttcagt
gaattcaaacaaggcttccagatttcgtattccggtgttggtgttgtacaaatgacattc
ctccgcctgctcagtgcatcggctcgtcagaacttcacgtataattgctacaacacacct
gcatggtacgacagagtgaatgacagttatgactcggcggtgtcgctcatgggtgccaac
gaggaagaattcgcacatggcaccgcctatgtcccggatgtattaaaagatggctgcaag
gacaaaccaaataagagtaaaacagtctttcaaattgaaacaacaaagctaaatcaacta
ccgatcatcgactttatgccgggtgaatttggaggacgtgaccagcggttcggctttgaa
gcaggtcctgtctgctttgattag
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