Ptychodera flava: 139114348
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Entry
139114348 CDS
T10724
Name
(RefSeq) superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pfll Ptychodera flava
Pathway
pfll03018
RNA degradation
Brite
Enzymes [BR:
pfll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139114348
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139114348
mRNA degradation factors
3'-5' decay
Ski complex
139114348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139114348
NCBI-ProteinID:
XP_070532118
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Position
16:23276331..23301775
Genome browser
AA seq
1259 aa
AA seq
DB search
MAAQLKLLEETKQDLPPRDPAHLSFSLLEIGTAGNVAVVPESEESPNLRLSTVPNGLPPV
LPDVKEELEKYLTCPASLLVSQKFWPRQPCVENLYHMDSCPVQSTLQVKRKPTTGELLGY
EEVDVVDTGISAKNSTSLARPPGPLSEAVRGSSTNFPFWPGGMDEPSLDVITKSLESATV
DLEHDLETVPPGFECGMSFEEEKDEKEEAVPIETKTGTVLTLNDIVGDFDDLDLMGDDEE
ENDEQRREDDMDESAQIPRSESLEDMLIKNEEEKAAEDTPVKVARPVEEQWAVNVDISTP
VSDFYKRIPDPAYRWPFELDVFQKQAILRLENHESVFVAAHTSAGKTVVAEYAIALAAKH
MTRTVYTSPIKALSNQKFRDFKTTFSDVGLLTGDVQIHQEASCLIMTTEILRSMLYNGSD
VIRDLEWVIFDEVHYINDSERGVVWEEVLIMLPDHVNLILLSATVPNTLEFAEWIGRTKR
KKIYVISTLKRPVPLEHYLYTGNSNKTSNEKFLIVDSTRNFMTKGYYKAVDAKKERASKH
STSYGAKGVRQGNPQQDKNVWLSIVGMLKKSDGLPVVAFTFSKKKCDSNASQLTTLDLTT
SIEKSEIHVFFQKCVQRLKDNDRKLPQVLHMKELLKRGVGVHHSGILPILKEVIEMLFQR
GLVKLLFATETFAMGVNMPARTVVFDSIRKHDGMAFRDLLPGEYIQMAGRAGRRGLDTTG
TVFILCKGDVPEMADLHKMMLGKPTKLESQFRLTYSMILNLLRVEALRVEDMMKRSFSEF
HTQKDRKVRQRSLEEMSKKLKTMKDVDCTKCKADLEEYYLRCKEIQDLRTSLQKIVITHP
QAVKALSQGRIVIINNSKHKSALAVVLSVSSSSSAERTFKVLVLTEKSPDSNSVQNSVSK
DNTVTDCDVLPITANSTKLFQPEGAGDHTVEEITGDDMGGITTRVLKVAADNIIADYKKR
QQLRFRNDPPGQSCSVATQELLRITHANPDGLETLDPIADLHIRDIDLVERFKQKQFLEK
TIENFTCVNCPHFQKHFQEMHEIMKVKGEFQRLKYLLSDQSLQLLPEYQLRISVLRELRY
IDGTNTVQLKGRVACEISNHELIITELVFENVLTSLDPTEIAALLSCMVFQEKRCSEPKL
TETLEQGKQRIIDVATRIGQLQVHSGLKIPVGDYVEQFRFGLTEVVYEWARKMPFSEITD
LTDVSEGIIVRTIQRLDEVCRDVRNAARIIGDPVLYKKMEDASSAIKRDIVFAASLYTQ
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcagttgaagttgcttgaggaaactaagcaagacctgccgccaagggatcca
gctcatttgtctttcagccttcttgagattggaactgcaggaaatgtagcagtagtgcct
gagagtgaagaaagtcctaacctccgtctgtcaactgttcccaatggtttgccaccagtt
cttccagatgtcaaggaggagcttgagaaatacctgacatgtcctgcaagtctgctagtg
tcacagaaattttggccgaggcagccatgtgtagaaaacctgtatcacatggacagctgt
ccagtgcagtcaaccctccaggtgaagagaaaaccaacaacgggagagttactgggatat
gaagaggttgatgtggtggataccgggatttctgccaagaattctacatcgctggctaga
ccaccaggtcctctgtctgaagctgtacggggcagttcaacaaattttccattttggcca
ggtggaatggatgagccctcgcttgacgttatcacaaaatcactggaatcagcaacagtg
gatcttgaacatgatcttgaaacagttccgccaggttttgaatgtggaatgtcatttgaa
gaagagaaagacgaaaaagaggaggctgttcccatagaaacaaaaactggaactgtcctg
accctgaatgacattgtcggagattttgatgacttggatctgatgggtgatgatgaagaa
gaaaacgatgagcagaggcgagaggatgacatggatgagagtgcacagataccaaggagt
gaaagtttagaagatatgctcatcaagaatgaagaggagaaggcagcggaggacactcca
gtgaaagtagcccgtcccgttgaagagcagtgggctgttaatgtggacatctctactcca
gtcagtgatttctacaagaggattcctgacccagcatacaggtggccgtttgagcttgat
gttttccaaaagcaagcgatcttacgcttggaaaaccatgagagtgtcttcgtcgcagcg
cacacctcggctggtaagactgtggttgcagagtatgccatagcccttgcagcaaagcat
atgacaaggactgtgtacacatctccaatcaaggctttatcaaatcagaaattcagggac
ttcaagactacattcagtgacgtggggttactgactggtgacgtacagatacatcaagaa
gcctcgtgtctcatcatgaccactgaaattttgaggtccatgttgtacaatggatctgac
gtaatccgtgatttagagtgggtgatatttgatgaggttcactacattaatgactcagag
agaggcgtggtatgggaggaggtgttgataatgcttccagaccatgtgaatctgatcctg
ttgagtgccactgtgccgaacaccttggaatttgccgaatggataggacgtacgaaaagg
aaaaagatatatgttatcagcactctgaagagaccagtacccttggaacattacttgtac
acaggaaacagcaataaaacaagcaatgagaaatttctgattgtggattcaactcggaat
ttcatgacgaaaggttactacaaagcagttgatgccaagaaagagagagccagtaaacac
agtacttcatatggagccaagggagtcagacagggcaacccacaacaggacaagaatgtg
tggctatcaatagttggcatgctaaagaagagtgatggactgccggtcgtcgccttcact
ttctccaagaagaagtgcgacagtaacgccagtcagctgacaactctagatctgaccacg
tcaatcgagaagagtgaaattcacgtcttcttccagaaatgcgtgcagcgattgaaggac
aacgataggaaactgccccaggttcttcacatgaaggaactgttaaagagaggtgttgga
gttcaccacagtggtattttaccaatcctgaaagaagtgattgaaatgctcttccagagg
ggacttgtcaagttgttatttgccactgaaacatttgctatgggagtcaatatgccagct
aggactgttgtctttgattccattcggaaacatgatgggatggcattccgggacttgctt
cccggggagtacattcagatggccggcagagctggacggagaggtctggacaccactggc
actgtattcatcctctgtaagggagatgtgccggaaatggctgatctgcacaagatgatg
ttgggaaaaccgacaaagctggagtcacaattcaggctgacgtacagcatgattctgaat
ctgctgcgagttgaagccctgcgagtggaagacatgatgaagaggagtttctcagagttc
catacgcagaaagacaggaaagtacggcagaggagtctggaagagatgagcaagaagttg
aaaaccatgaaggatgttgactgtacaaagtgcaaggcagatttagaggagtactatctc
agatgtaaagagatccaggatttgagaacttctttacagaaaattgtaatcacacatcca
caagctgtcaaagccctttctcaaggtcgcatagtcatcatcaacaatagtaagcacaag
agcgccctcgcagttgtattgtctgttagtagcagctcgagtgctgagaggactttcaaa
gtgcttgttctcacggagaaaagccctgactctaattctgtgcaaaactcggtgagcaag
gacaatacagtgactgactgtgatgtgcttccaatcactgcaaacagtacaaaacttttc
caacctgagggcgctggtgatcataccgtcgaggagataacaggagacgacatgggtggc
ataacaacaagagttttgaaagtggcagcagataatattatagcagactataaaaaacgg
cagcaactcagattcagaaatgatccgcctggtcagtcctgcagtgtagccactcaggag
cttctcaggataactcatgccaacccagatggtcttgaaaccctggatcccatcgccgac
ctgcacatcagggacattgatcttgtcgagcggtttaaacaaaagcagttccttgaaaag
actattgagaatttcacatgtgtgaactgtcctcattttcagaagcactttcaggaaatg
catgagattatgaaggtgaaaggcgagttccaacgtttgaagtatctgttgtcagatcag
agtctacagctactccctgagtaccagctgagaatcagtgttctgagagaactgcgttat
attgatggcaccaacaccgtgcagttgaaaggacgtgttgcctgtgagatcagtaaccat
gaactcatcatcactgagctggtctttgagaatgtcctgacttccctggatccgactgaa
attgcagctctgttgtcgtgcatggttttccaagaaaagagatgttctgagcctaaattg
actgaaacgcttgaacagggaaagcagcgtatcattgatgttgcaactcgtattggtcaa
ctgcaagttcacagtgggttgaaaattccagttggtgattatgttgaacagtttagattt
ggtctgactgaagtggtctatgaatgggccaggaaaatgccattttctgagatcacagac
ctgactgatgtcagcgagggtatcattgtgagaacaatccagcgccttgacgaggtgtgc
cgggatgtccggaatgctgccaggataatcggtgatccagtgctctataagaagatggag
gatgcatcttcagctatcaagagagacattgtctttgcagccagcttgtacacgcagtga
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