Ptychodera flava: 139114602
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Entry
139114602 CDS
T10724
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
pfll Ptychodera flava
Pathway
pfll03018
RNA degradation
pfll03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139114602
09123 Folding, sorting and degradation
03018 RNA degradation
139114602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfll03019
]
139114602
03041 Spliceosome [BR:
pfll03041
]
139114602
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139114602
mRNA degradation factors
5'-3' decay
Lsm complex
139114602
Spliceosome [BR:
pfll03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
139114602
Complex C
U2 snRNP components
139114602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
139114602
NCBI-ProteinID:
XP_070532516
LinkDB
All DBs
Position
16:31877036..31879673
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AA seq
96 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSIHGTLHSVDQFLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDSQLLQDAARKEAVQNKGN
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgctcttctactcattttttaagtcattagtcggaaaggacgtagtggtggaactcaag
aatgatttgagtattcatggaacacttcactctgtggatcaatttctgaacatcaaacta
acagatatcagtgtaacagatcctgaaaaatatccacacatgttatcagtgaagaactgt
tttatacgtggttcagtggttcgatatgtgcagttaccagcagatgaagtggattcacag
ttactccaagatgctgcaaggaaggaagctgttcaaaataaaggaaactaa
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