Ptychodera flava: 139115072
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Entry
139115072 CDS
T10724
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
pfll Ptychodera flava
Pathway
pfll03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139115072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfll03400
]
139115072
DNA repair and recombination proteins [BR:
pfll03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
139115072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
139115072
NCBI-ProteinID:
XP_070533050
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All DBs
Position
17:117734..236285
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AA seq
1369 aa
AA seq
DB search
MSKQNTLFSYFTKSPASASRKVPSPTVGDVPNSKSKNTSPGETAKQQRSKSKDIDASRTE
CQYSLGDIVWSKLDRYPWWPSLVCNHPTKDTYFQKGKTPMVHVQFFDDTKSRAWIKEKSV
KPFTGSTAKETRMGGALFSPNPDIKQAAKAADKALKQTIEERLQMVVCIPSDDEDEIDGM
ENEENDDENIEVDNGQESNDQENMGKDSDSDDELVTRKTSMKRPRAAACKAAQIQHKQKK
RKVILESESEDDSEDDFHPESDSDAESDESFSSGVDENDVSESSDSDPETPKKFVKRKRT
ATTTTRATPKVKKALKEFSTPTSAKSTTPFKTPTVASSTKAKLSVFQAPDVISSPSPRVD
AAEKFPHHDYEWLKDGKRKDKKKRLHTDTDYDPSTLYVPDSFLQSCTPAMRQWWEMKSKN
FDTVMFFKMGKFYELYHMDSEVAVKELGLIYMKGQFAHSGFPEIAFGRYANTLIEKGYRV
ARIEQTETPDMMNERVKKMAKPTKFDKVVKRELCRISTKGTKTYSYIDGDVCEADNSYLL
AVTEKPCDDVVGGECIFGVCFVDTSIGKFHLGQFQDDRHCSRFRTLIAHFTPAQVLIEKG
KLSTKTNQVLNQNLASVIKDSLSSGSEFWDSTKTLKHLAEENYFVVQKKNTEDGENETAD
EEVWPDGIKEMLSETDTLGLTAKEGFELAVSALGAITWYLKKCCLEEELLSMRNFTVYKP
IDNLSMLKHMSTPDFVKGRHHMVLDGITLSNLDVIDNGVTGTAEGTLFEKLDNCTTPFGK
RLLKQWLCAPLCNPESINDRLDAIDDLMNIPDVVAEVKEMTRKLPDLERLLSKIHSLGLS
RKNKNHPDSRAIFFEQVAYSKRKIEDFLAALQGFKTCLKIIKLFKGKTAQFKSKILKQST
TVVSAENPKAAFPDMKEQLDFFDNAFDHSKAKSVGAIIPSRGVDNDYDSAIDDIKYLEKK
LDQYLDRQKSRLGNRSLSYWGSGKNRYQMEVPESAVKNVPDEYEVTSSKKGWKRYTTPDI
QEMLQELIEKEERRDXSSKDIMRRIFAIFDKHYKDWDTAVQCLSVLDVLLSLTHYSQSGE
CDMCRPELVAPSGDQKPFISIGNARHPCIVRTYSGGDFIPNDTYIGCKSETDEDDVVVDD
KSSCVLVTGPNMGGKSTLMRQVGLVVILAQLGCYVPAEFCKMTPVDRIFTRLGASDRIMS
GESTFYVELSETSAILQHATIHSLVLMDELGRGTATFDGTAIACAVVKEISETIQCRTLF
STHYHSLVEEFSHDSNIRLGHMACMVENECEDDPSQETITFLYKFVKGACPKSYGFNAAR
LADLPEEIIRKGQAKARQFEASLERLKLFKMLSTLDKSTEKEKLHSILA
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacagaacaccctattttcctattttacaaaatctccagcctctgcatcaagg
aaagtaccatcgccaactgtgggagatgttccaaactcaaagtcaaagaacacgtctcct
ggagagacagcgaaacaacagcgttccaagtcaaaagacatcgacgctagtcgtacagaa
tgtcagtacagtcttggtgacattgtgtggtccaagctggatagatatccatggtggcca
agtttagtttgcaatcatccaaccaaagatacttactttcaaaagggcaaaactccaatg
gttcatgtccagttctttgatgatacaaaaagcagagcttggataaaagagaaatctgtc
aagccattcacaggctccacagctaaagagaccaggatgggaggggctctcttcagccca
aatccagatattaagcaagcagccaaggcagccgataaagctttaaagcagactattgaa
gaaagactacagatggttgtctgtataccatcagatgacgaagatgaaattgatggaatg
gagaacgaggaaaatgatgatgaaaatatcgaagttgacaatggacaggaaagcaatgat
caggagaacatgggaaaagacagtgacagcgacgatgaattggtaaccagaaaaacatca
atgaagcgccctcgtgctgctgcatgtaaagctgcacaaattcagcacaaacagaagaaa
aggaaagtgattctggaatctgagagtgaagatgactctgaagatgatttccatccagaa
tctgacagcgatgctgaatctgatgagagttttagtagtggtgttgatgaaaatgatgtt
tctgaatcgtcagactctgatcctgaaacaccaaagaaatttgtgaagaggaagcggacc
gccacaacaacaaccagagcaactcccaaagttaagaaggcactgaaagagttctcaaca
ccaacatcagcaaaaagcactactccgtttaaaactccaacagttgcttcatcaacaaaa
gctaaattatcagtgttccaagcaccagatgtcatcagttcaccatcaccacgagttgat
gctgcagaaaagtttccacaccatgattatgaatggcttaaagatggcaaaagaaaagat
aagaagaaacgtttacacactgacacagactatgaccccagtactctttacgtacctgac
agttttcttcaaagttgtacaccagccatgagacagtggtgggagatgaaatctaaaaac
tttgatacagtgatgtttttcaagatgggaaaattttatgagctgtatcacatggatagt
gaggtagctgtgaaggaacttggtcttatatacatgaagggtcagtttgctcattctggg
tttccagagatagcatttggtcgctatgccaacacactgattgagaaaggatacagagtt
gctaggatagaacagactgagacgccagacatgatgaatgaaagagtcaagaaaatggcc
aaaccaacaaaatttgataaagttgtcaagcgtgaactttgcagaatttctacgaaggga
acaaaaacttacagttacattgatggagacgtctgtgaagcggacaatagttacttactg
gctgtgacagagaagccgtgtgatgatgtagtgggtggtgaatgtatctttggtgtgtgt
tttgttgatacttccatcggtaaatttcatcttggacaatttcaagatgatcggcactgt
tccaggtttagaaccctgattgctcatttcactccggctcaggtgctgatcgaaaagggt
aaactttcaacaaaaacgaaccaagttttgaatcaaaatctagcatctgtcattaaagat
tctctttcgtctggctctgaattctgggatagcactaaaaccttgaaacatcttgcagaa
gaaaactattttgtcgtacagaagaagaatactgaagatggtgaaaatgaaactgctgat
gaagaggtttggcctgatggaattaaagaaatgctctcggaaacggacactcttggattg
actgctaaagagggatttgagttagctgtcagtgcactaggagcaattacttggtacctg
aagaaatgttgtcttgaagaggagctactttcaatgagaaatttcaccgtctacaaacct
attgataatctgtcaatgttaaaacatatgtcaactcctgattttgtaaaaggacgccat
catatggtactggatggaataacattatcaaacctagatgtgattgacaatggagtcaca
ggtacagcggagggtacgttgtttgagaaacttgacaactgtacaactccatttgggaag
agattattaaaacagtggctgtgtgctcctctatgtaaccctgaatccatcaatgacaga
ttggatgccatagatgatttgatgaatattcctgatgtagttgctgaagttaaggaaatg
acacgcaaattgccagatttagagcggttactaagcaaaatccacagccttggattatcc
cggaaaaacaagaatcatccggacagcagagcaatattctttgaacaagtagcttacagc
aaaaggaaaatagaagatttcctagctgctctgcaagggtttaaaacttgccttaaaatt
attaaactctttaaaggaaagactgcccagttcaagtctaaaattctcaaacaatcaaca
actgttgtaagtgctgagaatcctaaagctgcctttcccgacatgaaagaacaactggac
ttcttcgataatgcctttgatcacagtaaagctaagtctgttggtgcaattattccaagt
agaggtgttgacaatgattatgactcagccattgatgacatcaagtatcttgagaagaag
ttggatcagtatctagacagacagaaaagtagactcggaaacaggagcctgtcttactgg
ggatcgggtaaaaatcgttatcagatggaagttccagaatctgcagttaaaaatgtccct
gatgaatatgaagtgacatcctcaaagaaaggttggaagagatacacaactccagatatt
caggaaatgcttcaagaattgattgaaaaagaagagagacgtgatnacagctctaaagac
atcatgagaagaatctttgcaattttcgataagcactacaaggactgggatacagcagtt
caatgcctgtctgtgttggatgtattattgtcacttacacactatagtcagtcaggagaa
tgtgatatgtgtcgtcctgaattggtagcgccctctggtgatcaaaagccatttatctca
attggcaatgcaagacatccttgcatcgttaggacttacagtggaggtgattttattcca
aatgatacatacattggctgtaaaagtgagacagatgaagatgatgttgttgttgatgat
aagagtagttgtgtcctggtaactggtccaaacatgggtggcaaatcaaccctgatgcgt
caggttgggttggtggtaatactagcacagctagggtgctatgtgccggcagagttctgc
aaaatgactcccgttgatagaatttttacaagacttggtgctagtgacagaattatgtca
ggtgagagcactttctatgtggagctgagtgaaacatcagcaatattacaacatgcaaca
attcattcattggttttgatggatgaacttggtcgagggactgctacatttgatggcaca
gccattgcatgtgccgttgtcaaggagatatctgaaactatccaatgccgtaccttgttc
tcaactcattatcattctcttgtggaagaattttcccatgattcaaatatacggctaggg
cacatggcatgtatggtggaaaatgaatgtgaagatgacccaagccaagaaactattaca
ttcctttacaaatttgtcaaaggagcctgtccaaaaagttatggttttaatgctgcaaga
ttggctgatttgccagaggagatcattcgcaaaggtcaagcaaaggcccggcagtttgaa
gcatctcttgaaagactaaagcttttcaaaatgttgtcaacattggataagtcaactgaa
aaagagaaattacattccatacttgcttaa
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