Ptychodera flava: 139118390
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Entry
139118390 CDS
T10724
Name
(RefSeq) collagen alpha-2(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
pfll Ptychodera flava
Pathway
pfll04382
Cornified envelope formation
pfll04512
ECM-receptor interaction
pfll04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139118390
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139118390
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139118390
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pfll04147
]
139118390
00536 Glycosaminoglycan binding proteins [BR:
pfll00536
]
139118390
Exosome [BR:
pfll04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139118390
Glycosaminoglycan binding proteins [BR:
pfll00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139118390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
139118390
NCBI-ProteinID:
XP_070537787
LinkDB
All DBs
Position
19:complement(2806267..2911668)
Genome browser
AA seq
1696 aa
AA seq
DB search
MNTWVFVAASIFVFANLSLADQYCNELCGDCRCKGQKGSRGIHGRIGPQGQRGSIGFLGK
EGFPGEKGYKGEAGVPGQRGPTGERGPIGVPGFPGINGIPGIQGIRGAPGIRGLDGCNGS
IGDSGPPGLGDPNARGFPGLPGSDGVKGQKGEPARGGGGPGRPGRPGIPGSPGQKGDVGE
KGERGEFGFPGQKGTKGNMGVGFIGNKGERGAPGPPGTVEFTQPPTEVKGEKGKPGMKGN
VGFKGMEGEPGDPGQRGAPGPLGMVGEKGVPGPAGPRGEPGDDGIAGVPGFRGDPGNGGT
PGSFGLKGFKGDLGDEGFVGPPGIKGKPGDDPEIGDGPPGRPGRQGRRGAPGPRGPPGPP
GEAGRQGSLGRSGPPGQEGPIGPEGAGRDGQKGEPGMIGMPGKIGLQGLTGRPGSKGVLG
AKGEQGVALPGESGMDGPQGMRGQRGPRGPEGPVGPPGPPGDHMNGDDFIGEMGPPGPPG
FKGFKGLPGPVGPPGRFGDKGDVGGDCSAICLQGAKGEPGETGFRGAPGLTGPSGGEGPK
GRSGGFGETGPPGLPGNPGSDSTTIGPRGGDGEKGSRGEPGPEGPPGRQGDQGEPGAPGL
AGRPGDNNPKQYKGPPGAKGTPAVEIPGTPGFKGSVGEPGFEGPPGFPGFKGEKGSIPDE
MMGVPGEAGPSGFTGRPGPEGFKGSAGSPGRTGRQGLPGLQGFKGLQGFPGLPGGPGSQG
PTGVRGDRGQQGIPGEKGEDGFPGLQGAPGRPGFKGEPGDTLEARGSKGGQGPPGIDGDN
GPRGQKGMIGVPGFPGDPGRPGAIGAKGEMGDMGRPGRPGFEGIKGFPGVRGPDGASGRD
GSVGLPGLKGFPGFPGQPGEDGEPGTDGFKGEPGEPGAEQGPRGPLGPDGERGGDGFPGF
KGFPGQEGSQGIDGFPGPQGLPGEVGLPGARGEPGDKGRDGNPGFFGDIGLKGPRGDTGP
DGEVGEPGEPGKAVGFMVKGEPGLPGPNGIDGSDGFPGFDGRPGDNGSPGDNGAPGEDGL
PGERGPDGVAGEPGDAGEKGSPGFAGFPGNPGFKGRDGPPGEPGPRGPDGDNGLKGESGP
AGRPGPTGRPGRAGRISLLKGVKGEKGMPAEGMDDLEEMMKKMKGSKGGPGFPGFQGRKG
QPGEQGEKGFAGFTGFPGRPGFPGNVGPSGPKGEKGSIGLPGLNGVPGQRGEEGDPGDFG
PRGAPGLLGETGPQGDKGARGLDGRPGINGLDGEKGQEGDDGFPGFPGQKGDRGEPGRGM
EKGERGDKGRQGDPGLQGREGRPGAQGENGPEGPKGMEGEAGSPGRDGSPGRPGLPGFGG
FPGLPGDEGGAGDDGPPGKPGLPGVNGFSGERGDTGDIGPEGPQGPPGFNGLKGEPGEPG
DAAPGIKGDSGDPGLPGLQGPPGFQGLPGRRGPDGGSGEKGEKGDRGIVGTPGRDGSDGF
QGFRGRPGSPGPGGPTGALGDIGEPGIPAPAALRSFLLTRHSQTAQVPACPEGQRELWNG
YSLLYTEGNDKSHFQDLGTAGSCLPRFSPMPFVFCNINNQCNYASRNDKSYWLSTNAPMP
MMPVGDTDIIPYISRCSVCESPKQVMAVHSQDLTIPRCPNGWDGIWIGYSFAMYTASGAE
GGGQSLSSPGSCMEDFRATPFIECSGRGMCHFYANKFSFWLVTVGEDEQFAVPSPQTLKA
GSLRSRASRCQVCRKL
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atgaatacctgggtctttgtagccgcttcaattttcgtgtttgccaacttaagtttagcg
gatcaatactgtaatgaactgtgtggtgactgtaggtgtaaaggacagaaaggctcaagg
ggaatacatggaaggataggacctcaaggacaacggggatcaattggttttcttggaaaa
gagggctttcccggagaaaaaggatacaaaggagaagcaggagtaccaggtcagcgagga
ccaacaggagaacggggtcccatcggtgtaccaggttttccaggaataaatggcattcca
ggaattcaaggtattcgtggtgctcccggtatccgtggcttagatggatgcaatggatct
attggtgattctgggcctccaggtttaggtgacccaaatgctcgcggatttccaggtctt
ccgggttctgatggagtcaaaggtcaaaaaggagaaccagcaagaggcggtggtggtccg
ggaaggccaggccggccaggaattcctggatcacctggacagaaaggtgatgttggtgaa
aaaggggaaaggggtgagtttggatttccaggtcaaaaaggtaccaaaggaaacatggga
gttggttttattggtaataaaggagagaggggtgcaccgggtccaccaggaactgttgag
tttacacaaccaccaacagaagtgaaaggagaaaaaggaaaacctggtatgaagggtaat
gtcggtttcaaaggcatggaaggggaacctggagatcctggacagagaggagctcctggt
cctcttggaatggttggagagaaaggtgtgcctggaccagctggacctaggggggagcct
ggtgatgatggtattgctggtgtacctggtttcagaggagaccctggtaatggtggaaca
ccaggttcatttggtcttaaaggcttcaagggtgatcttggagatgaaggttttgttgga
ccaccaggtatcaagggaaagccaggagatgatccagaaattggtgatggaccacctggc
cgtccaggtcgacagggtagaagaggtgctcctggcccgaggggtcctccaggtcctcct
ggagaagctggacgtcagggtagtcttggtcgatccggacctcctggacaagaaggtcct
attggaccagaaggtgcaggacgagatggtcaaaaaggagaaccaggaatgattggtatg
ccaggcaaaattggtctgcaaggccttacaggtcgcccaggaagtaaaggtgtgttgggt
gctaaaggagaacaaggtgtagcactacctggagaatctggtatggatggaccgcaagga
atgagaggtcaaagagggccaagaggtcctgaaggtccagtaggaccaccgggtccacct
ggtgatcatatgaatggagatgatttcattggtgaaatggggccacctggaccacctggt
tttaagggatttaaaggattaccaggtcctgttggacctccagggagatttggtgacaag
ggtgatgttggtggtgactgttcggcaatctgcttgcaaggagcaaaaggtgaaccagga
gaaactggattccgtggtgcaccaggtttaactggaccaagcggaggtgaaggaccaaag
ggaaggtcaggtggttttggtgaaactggcccaccaggacttcctggtaaccctggaagt
gattcaacaacaataggaccaagaggaggtgatggagaaaaaggaagtcgtggagaacct
ggacctgagggtccaccaggtcggcaaggtgatcaaggtgaacctggtgcacctggtcta
gctggaagacctggagataacaatccaaagcagtacaagggaccacctggtgcaaagggc
actcctgcagttgaaataccagggacaccaggtttcaaaggttcagttggtgagcctggc
tttgaagggccaccaggatttcctggttttaagggagaaaaaggaagcattccggatgaa
atgatgggcgttccaggtgaggcaggtccaagtggatttactggaagaccaggaccggaa
ggtttcaaaggatccgctggaagtccaggtcgaacaggtcggcaaggtcttcccggactg
caaggattcaaaggtcttcaaggatttccaggtttaccagggggtcctggttcacaagga
ccaactggtgtccgtggtgacagaggccaacaaggtattcctggtgaaaaaggagaagat
ggatttcctggacttcaaggagcacctggaagaccaggtttcaaaggtgaacccggagat
actctggaagctaggggttcgaaaggaggacaaggtccgccaggaattgatggtgataat
ggtcccagaggacagaaaggaatgattggtgtaccaggatttccaggtgatcctggaaga
cccggtgctattggtgcaaaaggtgaaatgggtgatatgggtcgcccaggtagaccaggt
tttgaaggtataaaaggttttcctggtgtacgtggacctgatggtgcaagtggtcgggac
ggttcagttggattacccggattgaaaggctttccaggtttcccaggtcagcctggtgaa
gacggtgaaccaggtactgatggattcaaaggagaaccaggtgaaccaggagcagaacaa
ggcccacgtggtccacttggtccagatggagaaaggggaggtgacggatttccaggattt
aaaggatttcccggccaggagggtagtcaaggtattgatggctttccagggccacagggc
ttgcctggtgaggtaggtttaccgggagccagaggtgaacctggtgacaaaggcagagat
ggaaatcctggcttttttggagacattggtcttaaaggacctagaggagacacaggccca
gatggtgaagttggagaacctggagaacccggtaaagctgttggatttatggtcaaagga
gaacctggattacccggacccaatggaatagatggcagtgacggttttcctggatttgat
gggagaccaggtgataatggttctccaggagacaacggtgcacctggagaagatggccta
ccaggtgagagaggtccagacggtgttgcaggggaacccggggatgctggtgagaagggt
agtcctggctttgctggatttcccggaaacccaggatttaaggggcgtgatggaccaccc
ggagaaccaggacctcgtggtccagatggagataatggattgaaaggtgaaagcgggcca
gctggtaggcctggtcctacaggtagacctggtcgtgcaggccgtattagtctcctcaaa
ggtgtcaaaggtgaaaagggaatgccagctgagggaatggatgatctggaagaaatgatg
aaaaagatgaaaggatcaaaaggtggaccaggatttccaggattccaaggtcgcaaaggt
caacctggtgagcagggtgaaaagggctttgctggatttactggatttcctggacgacca
ggctttccaggaaatgtgggaccttcaggacccaaaggagagaaaggttccattggtctg
cctggcttgaatggtgtaccaggacagagaggtgaagagggagatccaggtgattttggt
ccacgtggggctccagggctgcttggtgagacaggacctcagggtgacaagggagctaga
ggtttagatggtcgaccaggtatcaatggtcttgatggtgaaaagggccaagaaggtgat
gatggtttccctggttttcctggtcagaaaggtgatcgtggtgaacctggacgaggaatg
gaaaagggagagagaggtgacaaaggacgtcaaggtgatccaggacttcaaggtcgtgaa
ggtcgcccaggagcacaaggtgaaaatggtcctgaaggacctaaaggtatggagggagag
gcaggttccccaggaagagacggttcacccggtcgtcccggattacctggatttggagga
tttccaggactgcctggtgatgaaggtggggctggtgatgatggaccaccaggtaagcca
ggactaccaggtgtcaatggttttagtggcgaacgaggtgataccggtgacattggtcca
gaaggaccacaaggtccgcctggcttcaatggactaaaaggagagccaggagagcctgga
gatgctgcaccaggaatcaaaggtgatagtggtgaccctggattaccaggattgcaagga
ccaccaggattccagggtcttccaggacgtagaggtccagatggaggaagtggtgaaaag
ggagagaaaggagatcgtggtattgttggtacaccaggtagagatgggtctgatggcttc
caaggatttagaggcagaccaggcagtccaggacctggaggtccaacaggtgcccttggt
gatataggtgaacctggcataccagcccctgctgcactgagaagtttcttgcttacacgg
cacagtcaaacagcacaggtaccagcttgtcctgaaggacaaagggagttgtggaatgga
tacagtttgctgtatacagaagggaatgacaaatctcacttccaggatctaggcactgca
ggatcgtgtcttcccaggtttagtccaatgccgtttgtcttctgcaacataaacaatcaa
tgtaactatgcaagccgtaacgacaaatcctattggttgtctaccaatgctccaatgcca
atgatgccagttggagacacagatatcatcccgtatatcagtcgttgttctgtctgtgag
tctcctaaacaagtcatggcagtacatagtcaagatttaaccataccaagatgtcccaat
ggctgggatggtatctggattggttacagctttgcaatgtacactgcatctggtgctgag
ggaggtggccaatcattgtccagtcctggctcctgtatggaagattttagagccacacca
tttatagaatgtagtggaagagggatgtgccatttctatgctaataaattcagtttctgg
cttgtaacagtaggagaagatgaacaatttgcagttccatcaccacaaactttgaaagct
ggtagtctaagaagtcgagccagtagatgtcaggtctgcagaaaactataa
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