KEGG   Ptychodera flava: 139119850
Entry
139119850         CDS       T10724                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
pfll  Ptychodera flava
Pathway
pfll03013  Nucleocytoplasmic transport
pfll03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pfll00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    139119850
  09122 Translation
   03013 Nucleocytoplasmic transport
    139119850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfll03019]
    139119850
   03041 Spliceosome [BR:pfll03041]
    139119850
Messenger RNA biogenesis [BR:pfll03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     139119850
Spliceosome [BR:pfll03041]
 Complex C
  Other components
   EJC/TREX
    139119850
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    139119850
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WDR55 ANAPC4_WD40 EIF3I Beta-prop_WDR19_1st Beta-prop_CAF1B_HIR1 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_RIG_2nd WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_NOL10_N Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_Vps41 eIF2A DSE1_N WD40_RFWD3 RMC1_N Beta-prop_WDR36-Utp21_1st Tricorn_2nd Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st PD40 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_HPS5 PAC11 WDR90_beta-prop_4th TRM82_WD Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_SPT8 B-prop_COPA_B_2nd Beta-prop_DCAF12 CFAP251_N Beta-prop_ACSF4 Peptidase_S9_N Beta-prop_ELP1_1st PROPPIN Cytochrom_D1 WD_LRWD1 WDCP
Other DBs
NCBI-GeneID: 139119850
NCBI-ProteinID: XP_070539873
LinkDB
Position
20:6172474..6185870
AA seq 319 aa
MATHIEDMRKYFQSYGRTEEVRAHSSKVHSVAWSCDGRKLASGSFDKTVSVFVLDKDRMG
RDHVYRGHGDSVDQLCWHPTNPDLFVTASGDKSIRIWDARSNKCAANVNTKGENINICWS
PDGHTIAVGNKEDLVTFIDARTHRTRAEEQFKYEVNEISWNNDNDLFFLTNGHGCINILS
YPELKPLQTLNAHPANCICIEFDPTGTYFATGSADALVSLWDVEELVCVKTFSRLDWPVR
TLSFSHDGKMLASASEDLVIDIADVATGEKITEVQCESPTFTVAWHPKKNLLAFACDDKD
KYERDRDAGTVKVFGFSSE
NT seq 960 nt   +upstreamnt  +downstreamnt
atggcgacgcacatagaagacatgcggaaatatttccagagctacggtcgtacggaagaa
gtccgtgctcactcctcaaaggtccattctgtagcttggagttgtgacggaagaaagctt
gcatctggttcttttgataaaacagtcagtgtttttgtgttagataaggacaggatggga
agagatcacgtatatcgaggacatggcgacagtgttgatcaattatgttggcacccaaca
aacccagatctattcgtcacagcatctggagataaaagtataagaatatgggatgcaagg
tcaaacaaatgtgcagcaaatgtcaatactaaaggtgaaaacatcaacatatgttggagt
cctgatggacataccatcgctgtcgggaacaaggaagatctggtaacatttatcgatgca
aggacacatcgaaccagggcagaagagcagttcaaatatgaagtcaatgaaatttcatgg
aataacgacaatgatctgtttttcctcacaaatggacatggttgtataaatatactcagt
tatccagagttgaaaccattacagacactgaatgcacatccagcaaactgtatttgcatt
gagtttgatcctacaggtacatactttgccaccggaagtgccgatgcattggtcagtctt
tgggatgtcgaagaacttgtttgtgtcaaaacgttttcaagacttgactggcctgtcaga
actctaagtttcagtcatgatggtaaaatgttagcatcagcttcagaggatcttgtcatt
gatatcgcagatgttgcaacaggtgaaaaaatcacagaagtacagtgcgagtcaccaaca
tttactgtggcttggcatccaaagaaaaatcttttggcctttgcttgtgatgacaaagac
aaatatgaaagggacagagatgcagggactgtcaaggtctttggattttcttcagaatga

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