Ptychodera flava: 139120644
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Entry
139120644 CDS
T10724
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pfll Ptychodera flava
Pathway
pfll03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139120644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfll03041
]
139120644
Enzymes [BR:
pfll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139120644
Spliceosome [BR:
pfll03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139120644
Complex C
U5 SnRNP specific factors
139120644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
DEXQc_Suv3
AAA_30
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
139120644
NCBI-ProteinID:
XP_070541263
LinkDB
All DBs
Position
20:complement(31644293..31685578)
Genome browser
AA seq
2140 aa
AA seq
DB search
MADATARSLQYEYKANSNLVLQADRSLIDRRPRDEATGEVMTLVGHLTGTRMGDKALRSK
PPMVEEKRAKRIKRDDARHDMQKFKGATLLSEGIEDMVGIFYKPKTPETRSTYEALLSFI
QAALGDQPRDILCGAADELLSTLKNEHTKMKEKKKELELLLGQLAEERFQLLVNLGKKIT
DYGSDKEPKNIDEEIDETFGVNVQFEESDDEDDEDVYGEVRDEGEEDEEGEEAGLNATLQ
ANLAGESLIEEKKKELHPRDIDAFWLQRQLRKFYDDPNVSQTKSAEVLDILKNAADDGQC
ENQLVVLLGFSQFDFIKVLRQHRPMILYCTLLASAQSEAERLRIEDKMKHDPELSLILKA
LQETESEDIIQEERARRAAARQTRIETDLEAMEVDEASEMQAVPKQVLDLEDLSFAQGSH
FMANKRCQLPDGSYRKQRKGYEEVHVPALKPKPFDANESLISIERLPKYAQPAFEGFKSL
NRIQSRLCKAALESDENLLLCAPTGAGKTNVALLTILREIGKNINMDGTINVDAFKIIYV
APMRSLVQEMVGNFNKRLGSYGITVSELTGDHQLTKDQIQATQIIVCTPEKWDIITRKGG
EKTYTQLVRLVIIDEIHLLHDDRGPVLEALIARTIRNIETTQEEVRLVGLSATLPNYQDV
ATFLRVKPDKGLFFFDNSFRPVPLEQQYIGITEKKAIKRFQLLNEIVYEKVMENAGKNQV
LVFVHSRKETGKTARAIRDMCLEHDTLGMFLREGSASTEVLRTEAEQVKNQELKDLLPYS
FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRW
VELGALDVLQMLGRAGRPQYDTKGEGILITSHGELQYYLSLQNQQLPVESQFISKLADNL
NAEVVLGNIQTVRDAVNWLGYTYLYIRMMRNPNLYGVPPDFRETDAYMEQRRIDLIHTAA
SLLDKNNLLKYDRKTGNLQVTELGRIASHYYCTNETITTYNQLLKPTLSEIELFRVFSLS
GEFRNITVREEEKLELNKLLERVPIPVKESIEEPSAKVNVLLQAYISQLKLDGFALVADM
VYITQSAGRLMRAIFEIVLHRGWAQLADKSLALCKMIDKRMWQSMSPLRQFKKIPEEVVK
KIEKKNFPWERFYDLGHNEIGELIRMPKMGKTIHKYVHQFPKLELATHIQPITRSTLRVE
LTITPDFQWDEKVHGNSEAFWILVEDVDSEIILHHEYFLLKSKFAQDEHVVKFFVPVFEP
LPPQYFIRVVSDRWIASETQLPVSFRHLILPEKNPPPTELLDLQALPVSALRNQALESLY
QEKFTIFNPIQTQVFNSVFNGDDNVFVGAPTGSGKTVIGELAILRMLSQNIDGRCVYVTP
LDALAEQVYNDWHAKFQLQLAKKVVLLTGETSTDLKLLAKGNIIISTPEKWDVLSRRWKQ
RKNVQNVNLFIVDELQLIGGENGPVLEVICSRMRYISSQIERNIRIVALSSSLSNAKDVA
QWLGCSATQTFNFHPNVRPVPLELHIQGFNITHNASRLIAMVKPTYNAILKHSPKKPVIV
FVPSRKQTRLTAIDLLTYCSADEQESRFLHCHKDDLEGHLSRVSDETLKEMLENGIAYLH
EGLTEVEKKVVEQLFMAGAIQVVVASRSVCWGINMAAHLVVVMDTQYYNGKIHAYVDYPV
TDVLQMVGRANRPFVESEVGKCVILCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEI
VTKTIENKQDAVDYLTWTFIYRRMTQNPNYYNLQGVTHRHLSDHLSELVENMLTDLEHSK
CISIEDEMDVSPLNLGMIAAYYYINYTTIELFSMSLNAKTKIKGLIEIIASAAEYANIPI
RHHEDTVLKQIANRLPNKLSNAKYNDPHIKTNLLIQAHLSRMQLSAELQSDTEEILNKAL
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWNKDSYLKQLPHFTQDVIKRCGDKDVE
SIFDIMEMEDDDRNELLALSDIEMADVARFCNRYPNIELTYEVSERDNLKSGQPVVVMVT
LEREDEITGPVIAPLFPQKREEGWWVVIGDTKSNSLISIKRLTLQQKAKVKLDFVAPSVG
SHSYTLFFMSDSYMGCDQEYKFTTHIREPGSSDEETSDED
NT seq
6423 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgccactgcgagatcgttgcagtatgagtacaaagccaactcaaatcttgta
ttacaagctgatcggtctctcatcgaccgacgccctcgtgatgaggccaccggagaagtg
atgaccctagtgggtcatctgactggcactcgtatgggagacaaagctctgaggagtaaa
ccaccaatggttgaagaaaagagggctaagcgtatcaaaagagatgatgccagacatgac
atgcagaaattcaaaggtgccacactgttatcagaaggtattgaggatatggttggcatt
ttctacaaacccaagacaccagaaacaagaagcacatatgaggcactgttgagtttcata
caggcagctctgggagatcagccacgtgatattttgtgtggtgctgctgatgaactgctg
tccactttgaagaatgaacataccaagatgaaagaaaaaaagaaagaattagagttactt
cttgggcagctagcagaggaaagatttcagcttttggtcaatcttggaaagaagatcaca
gactatggcagtgacaaagaacccaaaaacattgatgaagaaatagacgaaacatttggc
gttaatgtccaatttgaagaatcagatgatgaggatgatgaagatgtgtacggagaagtc
cgtgatgagggcgaggaagatgaagaaggagaagaagctggtttgaatgccactttacaa
gcaaatttggctggagaaagtttgattgaagaaaagaaaaaagaacttcacccacgtgac
attgatgctttctggcttcagcgacaacttagaaaattctatgatgatccaaatgtttcc
cagacaaaaagtgcagaggtgttggacatcctaaagaatgcagcagatgacggccagtgt
gaaaaccagcttgttgtcttactgggattcagtcagttcgattttattaaagttctcaga
caacaccgacctatgattttgtactgtacactgcttgccagtgcacagagtgaagcagag
agactgagaattgaagacaagatgaaacacgacccggaactgtcattaattctgaaagca
ctgcaggaaactgaatcagaagacatcattcaggaagagagagcaagaagagctgctgca
agacagaccagaattgaaactgatctggaagctatggaagtagatgaagccagtgaaatg
caagctgttccaaagcaagtgttggatcttgaggacctttcatttgctcaaggaagtcac
ttcatggccaataaacgatgtcagctgcctgatggttcatacagaaaacagagaaaaggt
tatgaagaagttcacgtcccagcattgaaaccaaaaccatttgatgcaaatgagtcgctg
atctcaatagaaagacttcccaagtatgcacagccagcatttgaaggttttaaaagtctc
aacagaattcaaagcaggctctgcaaagctgccttggagtcagatgaaaatctgcttctc
tgtgcacctactggagccggtaagaccaatgtagctctgttgaccatactgagagaaatt
ggcaagaatatcaacatggatggtacaatcaatgttgacgccttcaaaatcatctacgtg
gcaccaatgagatcccttgtacaggaaatggtaggaaatttcaacaagaggttgggaagt
tacggcataactgtttcagaattgactggtgatcaccagctgaccaaagatcagatccag
gccacacagatcattgtttgtacaccagaaaagtgggatatcattaccagaaagggagga
gagaagacgtacacacagcttgtcagacttgtcatcattgatgaaatccatctgcttcat
gatgataggggtcctgtcttggaagctctgattgcaaggaccatacgtaacattgaaacg
acccaggaagaggtgagattggtgggactcagtgccacgctaccaaactaccaagatgtt
gccacattcttgagagtcaagccagacaagggtctcttcttctttgacaattccttcaga
ccagtgcctctagaacagcagtatattggtatcacagagaagaaagccatcaagaggttt
caactcctcaatgagattgtctatgaaaaagtcatggaaaatgctggcaagaatcaggtt
ctggtgttcgtacactccaggaaagagactggcaagacagctagggcaatccgtgacatg
tgcctggagcatgacacactgggtatgtttctaagagagggatcagcctccactgaagtg
ctcagaactgaagctgaacaagtcaagaatcaagagctaaaggatctgctgccatacagc
tttgccatccatcatgccggtatgaccagagtggaccgtactctggtagaagatctgttt
gctgacaggcacatccaggtactggtgtccacggcaacactggcctggggtgtcaactta
ccagcacacactgttatcatcaaaggaacacaggtgtacaaccctgaaaaaggaagatgg
gttgagctgggtgcattagatgtgctgcagatgttaggtcgtgctggtcgtccacagtat
gacaccaaaggagaaggtattctcataacaagtcatggagaattgcaatactatctgtca
ctacagaaccaacagcttccagtagagagtcagtttatttccaagcttgcagacaactta
aatgcagaggttgtacttggtaacatccagacagtccgggatgcagtcaactggcttggc
tatacctacttgtacatccgtatgatgcgtaaccctaatctgtacggtgtgccgcctgat
ttccgtgagactgatgcatacatggaacagagacgcattgatctgattcacactgcagca
tccctgctggataaaaataacttgttgaaatatgacaggaagacaggcaatctgcaggtt
acagagcttggtcgtattgccagccactactactgcaccaatgagacaatcacaacttac
aaccagctgctgaaaccaacactgagtgaaattgagctgttcagagtattctccctctcc
ggtgagttcaggaacatcacagtcagggaagaagaaaagctggaactcaacaaactactg
gaacgtgttcccattcctgtcaaagagagtattgaggaacccagtgcaaaagtcaatgtt
ttgttacaagcatacatttcccagctgaagctagatggctttgcattggttgctgacatg
gtgtacattacacagtctgcaggtcgactcatgagggcgatctttgagattgtgttgcac
cgtggctgggcacagctggctgacaagagtctggccctttgcaagatgattgacaaacgc
atgtggcagtccatgagccctcttcgtcagttcaagaaaatcccagaggaggttgtgaag
aagattgagaagaagaacttcccgtgggagagattctatgaccttggacacaatgagatt
ggagagttgatccgtatgcccaaaatgggtaaaacaatccataaatacgtacaccagttc
cctaagttggaattagccacccatatccagcccatcacaagatccacgctgagagttgag
ttgacaatcacaccagatttccagtgggatgagaaagtacatggaaattcagaggcattc
tggattttggtggaagatgtcgacagtgaaatcatactacatcatgagtactttctgctg
aaaagtaaatttgcacaagatgagcatgttgtgaaattctttgttccggtgtttgagcca
ctcccgccacagtatttcatcagagttgtgtcagacagatggatagcatctgaaactcaa
cttccggtgtcattccgtcatttgatactgccggagaagaatccgccaccaacagagttg
ttggatctgcaagcccttccggtatcagctttgcggaaccaagctctggaatctctgtat
caggagaaattcaccatcttcaatcccatccaaacccaagtttttaactcggtcttcaac
ggtgatgacaatgtctttgttggagcacctactggtagtggaaagacggtcattggtgaa
ctggccatacttcgtatgttgtcacagaatatcgacggacggtgtgtgtatgtgacacct
cttgatgcccttgctgaacaggtgtacaatgattggcatgcaaagtttcaactgcagtta
gcaaagaaggttgtactattgactggtgaaaccagtactgacctgaaactgctggccaag
ggtaacattatcattagcaccccagagaaatgggatgtgttgtcaaggcgatggaaacag
agaaagaatgtacagaatgtaaacttgtttatcgttgatgaactgcagttgattggtggt
gagaatgggccggttctggaggtcatctgttcccgtatgagatacatctcatcacagatt
gagaggaatatccgtattgtggctctgagttcatcactgtccaatgctaaagatgtcgca
cagtggttaggttgtagtgctacacagacgttcaatttccatcctaatgtcagacctgtg
ccacttgaactacacatccagggcttcaacatcacccacaatgcatcccggctgatcgcc
atggtgaaaccaacatacaatgccatcttgaaacactcaccaaagaaaccggtgatagtg
tttgtgccatcacgtaaacagaccagactgactgccattgacctgttgacctactgctca
gctgatgaacaagagagtcgatttttacactgccacaaagatgatcttgaaggacatctg
agtagagtttctgatgagacactgaaagagatgttggaaaatggaattgcatatttacat
gaagggttgacagaagtagagaagaaagtggttgagcagctgttcatggctggtgccatc
caagttgtggtagcttctagaagtgtctgctggggaatcaatatggccgcccacctagtt
gtcgtcatggatacacagtattacaatggaaagattcatgcatatgtagactacccagtg
acggatgtacttcagatggtaggcagagcaaacagaccatttgtggagagtgaagttggc
aagtgtgtgatactgtgccaagggtcaaagaaagatttcttcaagaagttcctctatgaa
cctctgcctgttgagtctcatctggatcattgcttgcatgatcatttcaatgcagagatt
gtcaccaagacgattgagaacaaacaggatgctgttgattatctcacatggacgttcatt
taccgaagaatgactcagaatccaaactactacaatttacaaggagtgactcaccgtcac
ctgtcagatcacttgtctgaactggtagagaacatgctgactgatctggaacactctaaa
tgtatcagcatagaagatgaaatggatgtcagtcccttgaacttgggaatgattgctgcg
tactactacatcaactacaccaccatagagttgttcagtatgtctttgaacgccaagacc
aagatcaaggggttgatagaaatcatagcatctgccgcagagtatgcaaatattccaatc
aggcaccatgaagacacagtcctgaaacagattgcaaatagactgccaaacaaactgagc
aatgccaagtacaatgaccctcacatcaagaccaatctattgattcaagctcatctgtcc
agaatgcaactatcagccgagttacagtctgacactgaagaaatcctcaacaaggcctta
cgactcattcaagcatgtgttgatgtactgagtagcaatggttggttgtcgcccgcctta
gctgctatggagctggcacagatggtaacacaggccatgtggaataaagactcctatctc
aaacagctaccacacttcactcaagatgttatcaagcgctgtggtgacaaggatgttgag
agtatctttgacattatggagatggaggatgacgatcgcaatgagttgcttgcattgtca
gatattgaaatggctgatgtggcaagattctgcaatcgctatcccaatattgaactgaca
tatgaagttagtgagagggacaacttgaaaagtggtcaaccagttgttgttatggtgaca
ctagaaagagaggatgaaatcacaggacctgtcatcgcaccactcttcccacagaaacgt
gaagaaggctggtgggtagtcattggagacaccaagtcaaacagtctcatttcaatcaag
cgtctaactttgcaacagaaagccaaggtgaaactggactttgtagcgccctctgtgggc
agccacagctacacactcttctttatgagtgactcctacatgggctgtgatcaagagtat
aagtttacaacacacatcagagagcctggaagctcagatgaggaaacttcggatgaggat
tag
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integrated database retrieval system
