Ptychodera flava: 139121103
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Entry
139121103 CDS
T10724
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pfll Ptychodera flava
Pathway
pfll03013
Nucleocytoplasmic transport
pfll03015
mRNA surveillance pathway
Brite
Enzymes [BR:
pfll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139121103
5.6.2.5 RNA 5'-3' helicase
139121103
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139121103
mRNA cycle factors
Common to processing body (P body) and stress granule
139121103
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NCBI-GeneID:
139121103
NCBI-ProteinID:
XP_070541842
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Position
21:3131861..3169096
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AA seq
1115 aa
AA seq
DB search
MSVDTYGPSSQTLTFLDTEEGDLLGADTQGSEFDFTDFTLPSQTQASQSQASQLESQTQS
QSQVNGGEAISQNGPLEDGVAMATQAMGELNFEEDEEEAFCMKDLPAYACNYCGIHDPAS
VVMCNSTKKWFCNGRGNTSGSHIVNHLVRTKCKEVTLHKDGPLGETILECYNCGCRNVFL
LGFIPAKADSVVVLLCRQPCATQSNLKDMNWDPSQWQPLIQDRQFLSWLVKIPSEQEQLR
ARQISAQQINKLEELWKENPDATLEDLEKPGVDEEPQSVLLRYEDAYQYQNIFGPLVKLE
ADYDKKLKESQTQDNIVIRWDIGLNKKRIAHFNFPRRDGDLKLMHGDELRIRYLGELHKP
WSGVGHVVKIPDNYGDEVGIELKSNAGAPLECTHNFVVDFVWKSTSFDRMQGAMKTFAVD
ETSVSGYIYHKLLGHEVEEVVVKCNLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGP
PGTGKTVTSATIVYHLAKQNMGQVLVCAPSNIAVDQLTEKIHHTGLKVVRLCAKSREAID
SPVSFLALHNQVRSMETFPELQKLQQLKDETGELSSADEKRYRTLKRNCERELLQNADVI
CCTCVGAGDPRVAKFRFRSILIDESTQATEPECMIPVVLGAKQLILVGDHCQLGPVVMCK
KAARAGLSQSLFERLVVLGIRPIRLQVQYRMHPTLSSFPSNIFYEGSLQNGVTPAERTNK
ALDFPWPQADKPMFFYATTGQEEIASSGTSYLNRTEAANVEKITTRFLRSGIRPEQIGII
TPYEGQRAFIVQYMQHNGSLHAKLYQEVEIASVDAFQGREKDYIILSCVRANEHQGIGFL
NDPRRLNVALTRAKFGNIIVGNPKVLSKQPLWNHLLNHYKEQKVLMEGPLNNLKESMIQF
SKPRKLVNTTNPGGRFMSTAMFDAREVMIPGSAYDRSGMGSSNMRYDNYYQTHDQMGYIS
SERAHAAGANIPIPVNMFMPHMPPMHSYYNQMAPSGGRPPPKARGPHRRGHQQRHQNHYN
NSQNMSQFSGGVPSQASQDTSQPFSQGALTQAHLSMSQPLSQPGLSQPGLSQPELSQDSY
LGDEFKSQADVVLSQDSTYQGDRNYQQGAGNFSQY
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagacacatatgggccgagctcacagactttaaccttcctcgacacggaagaa
ggcgatctgttgggtgcggacacgcaaggatcggaatttgatttcacagattttactcta
ccatctcaaacacaagcgtcgcagagtcaggcctcacaacttgaaagtcaaacacagagt
caaagtcaggtcaatggaggcgaagcaatttctcaaaacgggccgctggaagatggggtt
gccatggcgacccaagcaatgggcgaactgaactttgaagaagatgaagaggaggcgttc
tgtatgaaagatttgccagcatatgcctgcaattactgtggcatccatgatcctgcatct
gtggtaatgtgtaacagtaccaagaagtggttctgtaatggacgtggtaatacatcaggg
agccatattgttaaccaccttgtccggaccaagtgcaaagaagtgacactgcacaaagat
ggaccacttggcgaaacaatcctggaatgttacaactgtggctgtagaaacgtctttctg
ctcggattcataccagctaaagcagactctgtcgttgtcttactctgtagacagccatgt
gcaacccagagcaacctgaaagacatgaactgggatccatcacagtggcagcctctgatc
caggacaggcagttcctgtcatggctggtcaagatcccctctgagcaggaacagctcaga
gcacgccagatctcagcccagcaaatcaacaagctggaagagctgtggaaggaaaacccg
gacgccacactggaagatctggaaaaacctggcgtcgatgaggaaccgcagtcagttcta
ctgagatatgaagatgcgtaccagtatcagaatatatttggaccactggtgaagcttgaa
gcagactacgacaaaaaactgaaagagtcgcaaacccaagataacattgttattcgctgg
gatatcggactgaacaagaagaggattgcacacttcaacttcccgagacgtgacggagat
ttgaagctgatgcatggcgatgaattacgcatccgatatcttggagagctgcacaagccg
tggtccggagttggacatgtcgtgaagatcccagacaactatggtgatgaggttggcatt
gaactaaagagcaatgctggtgctccattggagtgcacccataactttgtggttgacttt
gtgtggaaatccacctcctttgacaggatgcagggtgctatgaagacctttgctgttgat
gaaacctctgtctctggttacatctaccacaaactgcttggacatgaagtggaggaagtg
gtggtcaaatgcaacctgcccaagaggttttcagcgcctggtctgcctgagctgaaccac
tcccaggtctacgctgtaaagactgtgcttcagaggcctctcagtctgattcagggccca
ccaggcacagggaagactgtcacatcagcaaccatcgtgtaccaccttgctaaacagaac
atgggacaagtcctggtatgtgcaccgagtaacattgctgttgatcaactgactgagaag
atacaccacacaggactcaaggttgtgcgtctttgtgccaagagcagagaagccattgat
tcaccagtgtcgttcctggctcttcacaaccaggtacgaagcatggagacattcccagaa
ctgcagaagctgcaacagcttaaggatgagactggagagctgtcaagtgccgatgagaag
cgctaccgtactttgaaacgaaactgtgaaagagaattgctgcagaatgctgatgtgatc
tgttgtacatgtgttggtgctggtgaccctagagtggccaagttcaggttccgcagcata
ttgattgatgagagtacccaggccactgaaccagaatgtatgataccagtcgtactggga
gcaaagcaactaattctagtcggcgatcactgccagcttggccctgtggtgatgtgcaag
aaagcagccagagctggcctctcccagtctctgtttgaacgtctcgttgtgcttggaatc
cgacccatcagacttcaggtgcagtaccgaatgcacccgactctcagttcctttccatcc
aacatcttctatgagggatcactgcagaatggagtcacaccggctgagagaaccaataaa
gccctggacttcccctggcctcaagcagataaacccatgtttttctatgccaccactggt
caggaagagatagccagctcaggaacttcatatttgaacagaactgaggctgctaatgtt
gagaagatcacaaccagattcctgcggtctggaatccgaccagagcagattggaatcatc
acaccttacgagggtcaaagggcgttcatagtgcagtacatgcagcacaatggatctctc
catgccaagctgtaccaggaggtggaaatcgccagcgttgatgccttccagggcagagag
aaggactatatcattctgtcttgtgtcagagccaacgaacatcaaggcatcggtttcttg
aacgatccaagacgtcttaatgtcgctctcaccagggctaagtttggtaacatcatagtt
ggcaaccccaaagtgttgtcaaaacagcctctgtggaaccatctgttgaaccactacaaa
gaacagaaggtgttgatggaaggtcccctcaacaacctcaaagagagcatgattcagttc
agcaaaccacgcaagctggtcaacacaaccaacccaggtggcaggttcatgagtacagcc
atgtttgatgccagggaagttatgattcctggaagtgcctatgatagatccggaatggga
tcaagtaacatgcgatatgacaattactaccagacacacgatcagatgggttatatcagc
tcagagagggctcacgctgccggtgccaacattcccattccggtgaacatgtttatgcct
cacatgccccccatgcactcctactacaaccagatggcaccctcggggggacggccccct
ccaaaggccaggggcccgcaccggagaggccaccagcagaggcaccagaaccactacaac
aacagtcagaacatgtcgcagttcagtggtggtgtaccaagtcaggcaagccaggacact
tcacagccattctcgcagggagctctgacacaggctcacttgtcaatgagccaaccactg
agtcagcctggtttgtcacagcctggactctcacagccagaactctctcaggacagttac
cttggagatgagttcaagtcccaggctgatgtggtcctgtcgcaagactccacctaccaa
ggcgacagaaactaccaacaaggggccggaaacttctctcagtattag
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