Ptychodera flava: 139121103
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Entry
139121103 CDS
T10724
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pfll Ptychodera flava
Pathway
pfll03013
Nucleocytoplasmic transport
pfll03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139121103
03015 mRNA surveillance pathway
139121103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfll03019
]
139121103
Enzymes [BR:
pfll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139121103
5.6.2.5 RNA 5'-3' helicase
139121103
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139121103
mRNA cycle factors
Common to processing body (P body) and stress granule
139121103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
DEAD
NPHP3_N
ATPase
NAT10_TcmA_helicase
SLFN-g3_helicase
nSTAND3
AAA_16
AAA_22
SRP54
PhoH
AAA_7
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
139121103
NCBI-ProteinID:
XP_070541842
LinkDB
All DBs
Position
21:3131861..3169096
Genome browser
AA seq
1115 aa
AA seq
DB search
MSVDTYGPSSQTLTFLDTEEGDLLGADTQGSEFDFTDFTLPSQTQASQSQASQLESQTQS
QSQVNGGEAISQNGPLEDGVAMATQAMGELNFEEDEEEAFCMKDLPAYACNYCGIHDPAS
VVMCNSTKKWFCNGRGNTSGSHIVNHLVRTKCKEVTLHKDGPLGETILECYNCGCRNVFL
LGFIPAKADSVVVLLCRQPCATQSNLKDMNWDPSQWQPLIQDRQFLSWLVKIPSEQEQLR
ARQISAQQINKLEELWKENPDATLEDLEKPGVDEEPQSVLLRYEDAYQYQNIFGPLVKLE
ADYDKKLKESQTQDNIVIRWDIGLNKKRIAHFNFPRRDGDLKLMHGDELRIRYLGELHKP
WSGVGHVVKIPDNYGDEVGIELKSNAGAPLECTHNFVVDFVWKSTSFDRMQGAMKTFAVD
ETSVSGYIYHKLLGHEVEEVVVKCNLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGP
PGTGKTVTSATIVYHLAKQNMGQVLVCAPSNIAVDQLTEKIHHTGLKVVRLCAKSREAID
SPVSFLALHNQVRSMETFPELQKLQQLKDETGELSSADEKRYRTLKRNCERELLQNADVI
CCTCVGAGDPRVAKFRFRSILIDESTQATEPECMIPVVLGAKQLILVGDHCQLGPVVMCK
KAARAGLSQSLFERLVVLGIRPIRLQVQYRMHPTLSSFPSNIFYEGSLQNGVTPAERTNK
ALDFPWPQADKPMFFYATTGQEEIASSGTSYLNRTEAANVEKITTRFLRSGIRPEQIGII
TPYEGQRAFIVQYMQHNGSLHAKLYQEVEIASVDAFQGREKDYIILSCVRANEHQGIGFL
NDPRRLNVALTRAKFGNIIVGNPKVLSKQPLWNHLLNHYKEQKVLMEGPLNNLKESMIQF
SKPRKLVNTTNPGGRFMSTAMFDAREVMIPGSAYDRSGMGSSNMRYDNYYQTHDQMGYIS
SERAHAAGANIPIPVNMFMPHMPPMHSYYNQMAPSGGRPPPKARGPHRRGHQQRHQNHYN
NSQNMSQFSGGVPSQASQDTSQPFSQGALTQAHLSMSQPLSQPGLSQPGLSQPELSQDSY
LGDEFKSQADVVLSQDSTYQGDRNYQQGAGNFSQY
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagacacatatgggccgagctcacagactttaaccttcctcgacacggaagaa
ggcgatctgttgggtgcggacacgcaaggatcggaatttgatttcacagattttactcta
ccatctcaaacacaagcgtcgcagagtcaggcctcacaacttgaaagtcaaacacagagt
caaagtcaggtcaatggaggcgaagcaatttctcaaaacgggccgctggaagatggggtt
gccatggcgacccaagcaatgggcgaactgaactttgaagaagatgaagaggaggcgttc
tgtatgaaagatttgccagcatatgcctgcaattactgtggcatccatgatcctgcatct
gtggtaatgtgtaacagtaccaagaagtggttctgtaatggacgtggtaatacatcaggg
agccatattgttaaccaccttgtccggaccaagtgcaaagaagtgacactgcacaaagat
ggaccacttggcgaaacaatcctggaatgttacaactgtggctgtagaaacgtctttctg
ctcggattcataccagctaaagcagactctgtcgttgtcttactctgtagacagccatgt
gcaacccagagcaacctgaaagacatgaactgggatccatcacagtggcagcctctgatc
caggacaggcagttcctgtcatggctggtcaagatcccctctgagcaggaacagctcaga
gcacgccagatctcagcccagcaaatcaacaagctggaagagctgtggaaggaaaacccg
gacgccacactggaagatctggaaaaacctggcgtcgatgaggaaccgcagtcagttcta
ctgagatatgaagatgcgtaccagtatcagaatatatttggaccactggtgaagcttgaa
gcagactacgacaaaaaactgaaagagtcgcaaacccaagataacattgttattcgctgg
gatatcggactgaacaagaagaggattgcacacttcaacttcccgagacgtgacggagat
ttgaagctgatgcatggcgatgaattacgcatccgatatcttggagagctgcacaagccg
tggtccggagttggacatgtcgtgaagatcccagacaactatggtgatgaggttggcatt
gaactaaagagcaatgctggtgctccattggagtgcacccataactttgtggttgacttt
gtgtggaaatccacctcctttgacaggatgcagggtgctatgaagacctttgctgttgat
gaaacctctgtctctggttacatctaccacaaactgcttggacatgaagtggaggaagtg
gtggtcaaatgcaacctgcccaagaggttttcagcgcctggtctgcctgagctgaaccac
tcccaggtctacgctgtaaagactgtgcttcagaggcctctcagtctgattcagggccca
ccaggcacagggaagactgtcacatcagcaaccatcgtgtaccaccttgctaaacagaac
atgggacaagtcctggtatgtgcaccgagtaacattgctgttgatcaactgactgagaag
atacaccacacaggactcaaggttgtgcgtctttgtgccaagagcagagaagccattgat
tcaccagtgtcgttcctggctcttcacaaccaggtacgaagcatggagacattcccagaa
ctgcagaagctgcaacagcttaaggatgagactggagagctgtcaagtgccgatgagaag
cgctaccgtactttgaaacgaaactgtgaaagagaattgctgcagaatgctgatgtgatc
tgttgtacatgtgttggtgctggtgaccctagagtggccaagttcaggttccgcagcata
ttgattgatgagagtacccaggccactgaaccagaatgtatgataccagtcgtactggga
gcaaagcaactaattctagtcggcgatcactgccagcttggccctgtggtgatgtgcaag
aaagcagccagagctggcctctcccagtctctgtttgaacgtctcgttgtgcttggaatc
cgacccatcagacttcaggtgcagtaccgaatgcacccgactctcagttcctttccatcc
aacatcttctatgagggatcactgcagaatggagtcacaccggctgagagaaccaataaa
gccctggacttcccctggcctcaagcagataaacccatgtttttctatgccaccactggt
caggaagagatagccagctcaggaacttcatatttgaacagaactgaggctgctaatgtt
gagaagatcacaaccagattcctgcggtctggaatccgaccagagcagattggaatcatc
acaccttacgagggtcaaagggcgttcatagtgcagtacatgcagcacaatggatctctc
catgccaagctgtaccaggaggtggaaatcgccagcgttgatgccttccagggcagagag
aaggactatatcattctgtcttgtgtcagagccaacgaacatcaaggcatcggtttcttg
aacgatccaagacgtcttaatgtcgctctcaccagggctaagtttggtaacatcatagtt
ggcaaccccaaagtgttgtcaaaacagcctctgtggaaccatctgttgaaccactacaaa
gaacagaaggtgttgatggaaggtcccctcaacaacctcaaagagagcatgattcagttc
agcaaaccacgcaagctggtcaacacaaccaacccaggtggcaggttcatgagtacagcc
atgtttgatgccagggaagttatgattcctggaagtgcctatgatagatccggaatggga
tcaagtaacatgcgatatgacaattactaccagacacacgatcagatgggttatatcagc
tcagagagggctcacgctgccggtgccaacattcccattccggtgaacatgtttatgcct
cacatgccccccatgcactcctactacaaccagatggcaccctcggggggacggccccct
ccaaaggccaggggcccgcaccggagaggccaccagcagaggcaccagaaccactacaac
aacagtcagaacatgtcgcagttcagtggtggtgtaccaagtcaggcaagccaggacact
tcacagccattctcgcagggagctctgacacaggctcacttgtcaatgagccaaccactg
agtcagcctggtttgtcacagcctggactctcacagccagaactctctcaggacagttac
cttggagatgagttcaagtcccaggctgatgtggtcctgtcgcaagactccacctaccaa
ggcgacagaaactaccaacaaggggccggaaacttctctcagtattag
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