Ptychodera flava: 139121492
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Entry
139121492 CDS
T10724
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5-like
KO
K11125
protein SMG5
Organism
pfll Ptychodera flava
Pathway
pfll03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139121492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfll03019
]
139121492
03032 DNA replication proteins [BR:
pfll03032
]
139121492
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139121492
mRNA cycle factors
Common to processing body (P body) and stress granule
139121492
DNA replication proteins [BR:
pfll03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
139121492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
139121492
NCBI-ProteinID:
XP_070542496
LinkDB
All DBs
Position
21:complement(14646857..14742431)
Genome browser
AA seq
1067 aa
AA seq
DB search
MSKSETKPPVKADVEKLQQTKRTYRSILDTIRRLEGGGSGKGKNAYKDAFQPENIALRNR
LKELCEKMMFLNPESYGRKAEELLWRKVFYDVIQIVKQNRKQFRPGSALECAYRTHLMSG
VGYYHHLINKVQLEFDVDVENIIDWTTVPDTQTHSDKKDAKKSYEPLAKGWAVNACHHCL
VYLGDLARYQQDLDGYRSTVLAERYYHQAIVWDPDMGMPHNQLGTLSGNRHQSCDAAYHY
MRCLMTSSPFEGALANLKRLFEKNRKKFRELPDSDPRDLPPDLQRPKDIKKFLIQFMYLV
GILQPDSMPSTAEIAEVCQKVLHDFNLCMYYTQANGEQPIMPTIRGAEDDKEQYVPDDLV
FKIVVMCLITIHRLQEKGSEQVSASIAFTLALFSHLLNHLNARIETALYDVEHPSSLIEN
QDREDPGHVDEINSDKESGREEDDQLTPQSTGTITPGQSQDALYGDNRAKNKEKKSKQRA
IHKLRRRRRGNHSDDDLSEGEDSASSPSDFSDSDSDISEDGILASDSDSEDDSLMESQEL
ASGFAAGDGTDAGVLGRPASNSPSEMNHGKSELKSGNNVSLTNHLKDMSNQLFAHNPSSS
FLRRNIRLAPTFEAYAMDRAQAEAQSEGSRNGNGSKSCGNSTEDKNVSVITDDTEQPEDE
KMETETETPEGAGDQVENKKGGLNRLITVLQEQGLMLSVKVFADWLMANPYIIETCAQSS
QSLWSRLSVFLNQLPKETQINNEELCQSTAALCIINSAIQYNDWQQTIALTEDHAVFKLP
LLKESQKHWQASYGEHVILTQADEALVRICCLRQFGHHLANLKSVNLFYDQEKNLFLGQS
HGISDGEPTVQETATLADLAKAQMKMAEEEARRNQLMRDMAQLRLQSEVKQLEGSLEPKD
QSSLSPYLVPDARVLSNHLNIIRQLAASARFIIIIPRVVIDTLDYIKKANQGARDAIKFL
EKEFHKGNRYIRAQKENEVGKGIERKKIKGEEREVWCLYRILDCCRYFACQSSDYDPKGM
VTILINYQPEESDSLSVRMRAAIKAANGEGINVEYAPDFHAKWKSQG
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagagtgaaacgaagccacctgtcaaagcagatgtggaaaaattacagcaaaca
aaacggacctatcggtccatattggataccataagaagactagaaggtggaggatcagga
aaaggaaagaatgcatacaaagatgcattccaaccggaaaatattgcacttagaaacagg
ttgaaggagctttgtgaaaaaatgatgtttttgaacccggaaagctacggtagaaaagct
gaagaactgctgtggaggaaagtgttctatgatgtcattcagattgtcaaacaaaacaga
aagcaatttcgacctggaagtgccctggaatgtgcatatcgcacacacctcatgtcaggt
gtgggctactatcaccatctcataaacaaggtccagctggagtttgatgtggatgttgag
aacattattgactggactacagtacctgatactcagactcattcagataaaaaagatgcc
aagaagtcgtatgaaccgttagccaagggatgggcagtgaatgcttgccatcattgccta
gtttatctaggtgatctagctcgctatcaacaagacctggatggttatcggagtaccgtc
ttggcagaacgttactaccaccaagccatcgtgtgggacccagacatgggcatgccacat
aaccagctgggtactctatccggcaacaggcatcagagctgtgatgctgcttatcattac
atgagatgccttatgacttccagtccatttgaaggcgccctagcaaacctcaagagactc
tttgaaaagaacaggaaaaaattccgggaattgccagacagtgatcccagagacttgccg
cctgacttacaaagacccaaggacattaagaaatttttaatccagttcatgtatttagtg
ggcattctacagccagactcaatgccaagcactgcagaaatagccgaagtatgccaaaag
gttctccatgacttcaacctgtgtatgtactacacccaggccaatggagaacagccaatc
atgccaaccatccgtggggcagaagatgataaggagcagtatgtcccggatgatctagtc
ttcaaaattgtcgtaatgtgcttgattacaatacacagacttcaagaaaaaggttctgag
caagtgtcagcatccattgctttcacacttgccctgttttcacacttgttaaatcatctg
aatgcaagaattgaaaccgctctgtatgacgtggaacatcccagttctctcattgaaaac
caggacagagaagacccaggccatgtagatgaaattaatagtgacaaggaaagtggccgt
gaagaggacgaccagctgaccccgcaaagtacaggtacgataacgccaggccagagtcaa
gatgctttgtacggagacaacagggcaaagaacaaggaaaagaagtcaaagcagagggct
attcataagctgaggaggaggaggaggggtaaccatagcgatgatgatctcagcgagggg
gaggactctgcgagcagtccgtcagatttcagcgattccgacagcgatatttcagaggat
ggcattcttgcgtcagattccgacagcgaagacgattccctgatggaaagtcaggagttg
gcatccggattcgccgccggtgatggtaccgatgcaggagtccttggtcggccggcgtca
aactcgccctcggagatgaaccatggcaagtctgagctgaagagtgggaacaacgtgtcc
ctcactaatcacctcaaggacatgtcaaatcagctgtttgcccacaatccaagttccagc
ttcctcagaaggaacatcagactggctcccacttttgaggcgtacgccatggacagggcc
caggcagaggcacagagtgagggaagcagaaacggaaatggaagcaaaagctgtggcaac
agcacggaagataaaaatgtcagtgttatcaccgatgatacagaacagccagaagatgaa
aaaatggaaacagaaactgaaacaccagagggcgctggtgaccaagtggagaacaagaaa
ggtggcctgaatagattgatcacagtgcttcaagaacaaggactcatgttgtctgtgaaa
gtctttgctgactggttgatggctaatccatacatcattgaaacatgtgcacagagttcc
cagtcactgtggtcccgactttcagtgtttctgaatcaacttccgaaggagacgcagatc
aacaatgaagaactgtgccagtctacagcggctctttgcatcatcaacagtgccatccag
tacaatgactggcagcagaccatcgccctgactgaggatcatgctgtgttcaagctacca
ctattgaaagagtctcagaaacactggcaggccagctacggtgaacatgtcatcctgaca
caggctgatgaggctcttgtccgcatctgctgtctgcgtcagtttggtcatcatctcgcc
aatctgaagtctgtcaacctgttttatgaccaggagaagaatctcttcctgggtcagtcg
catggtatttcagacggagaacccactgttcaggagaccgcaactttggcagaccttgca
aaagcccagatgaaaatggcagaagaagaggcacgcaggaatcaattgatgcgagacatg
gcacagcttagattacagtcagaagtcaaacaacttgaagggagtctggagcccaaggac
cagtctagtctgtctccatatctggtgccggatgccagggttctcagtaaccacctgaat
atcatccgccaactggcagcaagtgccagattcatcatcatcatacccagagtggttatc
gacacgctggactatatcaagaaggctaatcaaggagctagggatgccatcaagtttctt
gagaaggagttccacaagggaaataggtacatacgcgcccagaaagagaatgaagtaggc
aagggtattgagaggaaaaagatcaaaggagaagagagagaagtgtggtgcttgtatcga
attctagactgctgcaggtattttgcttgccagagttcggactacgatcccaaagggatg
gtaacgatattgataaattaccagccagaagagtcagattcgctatctgtccgcatgcga
gccgccattaaggctgccaacggcgagggaataaacgtggagtacgccccagacttccat
gccaagtggaaaagccagggatga
DBGET
integrated database retrieval system
