Ptychodera flava: 139123081
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Entry
139123081 CDS
T10724
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pfll Ptychodera flava
Pathway
pfll03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139123081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfll03041
]
139123081
Enzymes [BR:
pfll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139123081
Spliceosome [BR:
pfll03041
]
Complex A
U2 snRNP components
U2 related factors
139123081
Complex B
139123081
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
139123081
NCBI-ProteinID:
XP_070545163
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All DBs
Position
22:complement(26913832..26940682)
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AA seq
1118 aa
AA seq
DB search
MPRETSRHYRKRSRSSSGSSSRSPSPSRSKKRRSRSRDRDRYDRGRRRSRERDRFRRSRS
RERRRSRSRDRDRERERERERERERERERERERDRERDRDRDRDRRKRSRSPDRHHRSRS
SRSRSRDRKKSRSRSRERRSRSKERKKVRGSHDKKSSPPVSRSRDRRSRSKSKERKRSKS
PVKVKEEPQKVKEEREAPSLDKELEQKNLENEMQRRRERIEKWRQERKRQEAAAAQPAEQ
TEVNKKQWSLEDDTDDEEEETPQENGNKAPESGEKSVAVKEEKKEEQKEEEDDVDPLDAF
MQSVNEEVRHIHMQDSKKLNKGRSTVVTTQITGNKASGKISVMTGMAKKEEDRSRKGELM
ENDQDAIEYSSEEEEEDLKDAMTSLIQKKKKELEAVDHNKVNYKPFRKNFYVEVPEIAKM
TDDEVASYRSELEGIKIRGKNCPKPVKAWVQCGVSKKVLDVLKKNKYEKPTPIQAQAIPS
IMSGRDLIGIAKTGSGKTLAFLIPMYRHIMDQDELEMDEGPIAVIMTPTRELAMQIFKEC
KRFAKPLSLRTVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLSANSGRVTNLRRCTY
VVLDEADRMFDMGFEPQVMRIIDNIRPDRQTVMFSATFPRQMEALARRILNKPVEVQVGG
RSVVCSDVEQHVFILEDDEQKFLKLLELLGTYQEKGSVLVFVEKQEAADRLLKDLIKASY
SCLSLHGGLDQYDRDSTIQDFKAGNIKLLIATSVAARGLDVRQLILVVNYDCPNHYEDYV
HRVGRTGRAGNKGFAYTFLTPEQESYAGDVIKAFELAEQKPPDNVVKMWNDFTTRQKTEG
KKIMKSSGFSGKGFKFDETEKELANEKKKLQKAALGLQDSDEEDAGVDIDQQIEVMFASK
KRVKDVTVPVGTNPALAATAGNQPAPGAAPATGVNTEKLELAKLMAERINRNLEGSKDIM
QQATQAVLKGGALAAPTVSAKTIAEQMAEKINAKLNYRPPSENDEQNGNEAPTETFRKYE
EELEINDFPQTARWKVTSKENLAQIQEYSEAGITIRGTYIPPGKEVKDGERKLYLAIEST
SELAVQKAKKEITRLIKEELIRLQHSYQPTNKGRYKVL
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgccaagggaaactagtaggcattatcgtaagcggtccaggtcctcttctggaagttct
tcccgctcaccatcaccatccagatccaaaaaaaggcgatctcggagccgtgacagagat
cgctacgacagaggaaggcgacgatccagagaaagggacaggttcaggcggtcaagatca
agagaaagaagacggtcaaggtcccgagacagagacagggagagagaaagggagagggag
agggagagagaaagggagagggagagggagagagaaagggacagagaaagagacagagat
agagacagagacagacggaaacgatcaagatcacctgatcgacaccatcgctcccgaagt
agtcgcagcagatccagagatcgcaagaagtcacgatcgagaagtagggagaggagatcc
cggagtaaggaaaggaagaaagtccgtgggagccatgacaagaaatccagcccaccggtc
agcagaagtcgagacaggcgcagcagatcaaaaagtaaagaaaggaaacgatccaagtca
cctgtgaaagtcaaggaggaaccacagaaagtgaaagaagaaagagaagcaccctctttg
gataaggaactggaacagaaaaacctggagaatgagatgcagcgtcgaagggaacgtatt
gaaaagtggcgacaggagcgtaagagacaagaagcggcggcagcccagccggcagagcag
acagaagtcaataaaaagcagtggagcttggaagatgacactgatgatgaggaagaagaa
actcctcaggaaaatggcaacaaagcacctgagagtggtgagaagagtgtggccgtaaag
gaggaaaagaaagaagagcagaaagaagaagaagatgatgtagacccactggacgcgttc
atgcaaagtgtcaatgaagaagtacggcacattcacatgcaggattccaagaagttgaac
aagggaaggtcaactgttgtgacgacacaaattacaggaaataaagccagtggcaaaatc
agtgtgatgactggtatggctaagaaagaggaagatcgatctaggaaaggggaactgatg
gagaatgatcaagatgccattgagtattcttcagaggaagaggaagaggacttgaaggac
gctatgaccagtttaattcagaagaagaagaaggaattggaagctgttgatcacaacaaa
gtgaattacaaaccattccgtaaaaacttctatgttgaggtgccagagattgctaagatg
actgatgacgaggttgcaagttacagaagtgaattggaaggaattaaaatccgtggtaaa
aactgtcccaaaccagtgaaggcctgggtacagtgtggggtctccaagaaagtgctggac
gtactgaagaaaaacaagtatgagaaacccactcctatccaagcacaggctatcccgtct
atcatgtctgggagggatttgatcggtattgccaagactggcagtggcaagaccctggct
tttctcattccaatgtaccggcatatcatggaccaagatgaactggaaatggatgaggga
cccattgctgtgatcatgacaccaacaagggaactggctatgcagatattcaaggagtgt
aaacggtttgctaaaccactgtctctgagaactgtatgtgtctatggtggaactggaatt
agtgagcagatagcagagttaaaacgtggtgcggagataatagtttgtacacctgggagg
atgattgacatgctttcagccaatagcgggcgtgtgacaaacctaagacgatgtacctat
gtagtcctggacgaggctgatagaatgtttgacatgggttttgaacctcaggtaatgcgt
attattgacaacattcgaccagacagacagactgtcatgttctcagcaactttcccacgt
cagatggaagctctagccagacgcatcttgaacaaacctgtggaagttcaagtgggagga
cgtagtgtggtctgttctgacgtcgaacaacatgttttcatacttgaagacgacgagcag
aaattcctaaagctgcttgagttgttgggcacctatcaagaaaaaggaagtgtgctggtg
tttgtagaaaagcaggaagcagcagatcgacttctcaaggatctgatcaaggcctcgtat
tcatgtctgtcattacatggtggtctggatcagtatgacagggattctactatccaagac
ttcaaggctggtaacatcaaactgctgatagctacctcagtggccgccaggggcttggat
gtcagacaactcatcttggtggtgaactatgactgccctaatcactatgaagattatgtt
cacagagttggtcgcactggtcgtgccggcaacaaaggctttgcctatacattccttacg
cctgagcaagaaagttatgccggagacgtgatcaaagcctttgaactagcagagcagaaa
ccaccagacaatgtagtaaaaatgtggaacgactttacaaccagacagaaaacagaagga
aagaagattatgaagagtagtggtttcagtggaaagggatttaaatttgatgaaactgag
aaggagttagccaatgaaaagaagaaactgcaaaaagctgcgctgggattacaggactct
gatgaagaggatgccggtgttgatattgaccagcagattgaagtcatgtttgcatctaag
aagagggtgaaggatgtgacagttccggtgggaaccaatccggcattagccgccaccgct
ggcaaccagccagcgccaggcgctgctcctgccaccggtgtcaacactgagaagttagaa
cttgccaaactgatggcggagcgtatcaacagaaacttggaaggttccaaggacatcatg
cagcaggctacacaagcagttttgaaaggcggtgctctggctgctccaactgtatcggct
aagacaatagcagaacaaatggcagagaagatcaatgccaaactcaactacagaccacca
tcagaaaacgatgaacagaatggcaatgaagctccaactgaaacattccgtaaatatgaa
gaagagctggaaatcaatgacttcccacaaacagccaggtggaaagttacatcaaaggaa
aatcttgcacaaattcaggagtacagtgaagctggtattacaatcagaggaacatacatt
ccaccgggtaaagaagtgaaggatggagagagaaagctgtacttggcaatagaaagcaca
tcagagcttgctgttcagaaagccaagaaggaaatcaccaggttgattaaagaagagtta
attagactgcaacactcttatcagccaaccaacaaaggaagatacaaggttttatag
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