Ptychodera flava: 139129888
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Entry
139129888 CDS
T10724
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pfll Ptychodera flava
Pathway
pfll03018
RNA degradation
Brite
Enzymes [BR:
pfll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139129888
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139129888
mRNA degradation factors
5'-3' decay
Decapping complex
139129888
Chromosome and associated proteins [BR:
pfll03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139129888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139129888
NCBI-ProteinID:
XP_070551674
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Position
3:complement(34959995..34973510)
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AA seq
450 aa
AA seq
DB search
MAAAKIDGPMANHTGSSARPGTVPNSNPAKEEDWKKSLKIPPRDRRVQTSDVTRTKGNDF
EDYCLKRELLMGIFEMGWERPSPIQEESIPVALSGRDILARAKNGTGKTAAYLIPVLERI
DNSKDHIQALILVPTRELALQTSHTCKQLAKHTGARVMVTTGGTSLKDDIMRLYEPVHIV
IATPGRILDLMEKGVAKMSKCGTLTLDEADKLLSQDFKNMLDRVINFLPNDRQIMLFSAT
FPLTVQEFMTRHLTKPYEINLMDELTLKGITQYYAFVQEKQKVHCLNTLFSKLQINQSII
FCNSTQRVELLARKITELGYSCFYIHAKMRQEHRNRIFHDFRNGACRNLVCSDLFTRGID
IQAVNVVINFDFPRHAETYLHRIGRSGRYGHLGIAINLITYEDRFSLYQIERELGTEIKP
IPGSIDKSLYVAEYHSVPAEQDEEPTQDGK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccaagatagatggcccaatggccaatcacactggaagctcagcaaggccg
gggacagttccgaattcaaatcctgccaaagaggaggactggaagaaaagtttaaaaata
cctccccgtgacagaagagtgcaaacttctgatgtcacaagaaccaaaggcaatgatttc
gaggattactgtttgaagcgagaactacttatgggtattttcgagatgggctgggaaagg
ccctcacccatacaagaagaaagcattcctgtggcactttcaggccgagacattttagcc
agagcaaagaacggtacaggaaaaactgcagcatatctcataccggtgcttgaaaggatt
gataattcaaaagatcacattcaagccttgatactcgtccctacaagagagttggccctg
cagaccagtcatacttgcaagcagctagccaaacacacgggtgctagagtcatggtgacc
actggtggcaccagcctcaaagacgatattatgagactttatgaaccagtgcacattgta
atagccactccagggagaatactggacttaatggaaaaaggagtggccaaaatgagtaaa
tgcggaacactgacattagatgaagctgacaaactgttgtcccaggatttcaagaatatg
ttggacagggtcatcaacttcttaccgaatgacagacaaattatgctgttttccgcaacg
tttccattgacagtacaagaattcatgacccgacatcttaccaaaccctatgaaattaat
ctcatggatgaactgactttgaaaggtattacacaatattacgcctttgttcaggagaaa
caaaaagtacattgtctaaacacgttattttctaagctccaaatcaaccagtcaatcata
ttttgcaactcaactcagcgagtggagctccttgccaggaaaatcacagagctcggttat
tcctgcttctacatccatgcaaaaatgaggcaggaacacaggaatagaatattccatgac
ttccgtaacggtgcctgcagaaaccttgtttgttcagatctcttcactcgaggtatcgat
atccaggctgtcaacgttgtgatcaactttgatttcccaagacacgctgagacgtacctc
caccgcatcggcaggtcaggccgttacggccatcttggcatcgccataaacctgatcacc
tacgaggacagattttcactgtaccagattgagcgggagctcggaacagagatcaaacca
atcccaggcagtatcgacaagagcctgtatgtggccgagtatcactctgtcccagcagag
caggacgaagagccaacccaagatggcaaatag
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