Ptychodera flava: 139136805
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Entry
139136805 CDS
T10724
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pfll Ptychodera flava
Pathway
pfll03022
Basal transcription factors
pfll03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139136805
09124 Replication and repair
03420 Nucleotide excision repair
139136805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfll03021
]
139136805
03400 DNA repair and recombination proteins [BR:
pfll03400
]
139136805
Transcription machinery [BR:
pfll03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
139136805
DNA repair and recombination proteins [BR:
pfll03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
139136805
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
Motif
Other DBs
NCBI-GeneID:
139136805
NCBI-ProteinID:
XP_070560747
LinkDB
All DBs
Position
7:complement(12643107..12654638)
Genome browser
AA seq
404 aa
AA seq
DB search
MAAAEEETEKTYIWEGDYERTWEAIKEDESGSLQTVVDDIIHRAKRRRLLDRPANVRLGM
MRHLFVVLDMSKSMEDQDLKPNRLASSVKLLEHFIEEYFDQNPISQIGVLTTCNKRAEKL
TELGGNPKRHIAALQKCVDQPCSKEPSIQNSLELAATTLRHMPGHASREILIILGSLTTC
DPGNIHETIKAMKDLNVRCSVIGLSADVRVCRKLCDETKGTYGVILDEHHFKELLLEHVT
PPPATTNTESSLIRMGFPQHQIHTEKNKIEQPSMCMCHMDSKGSQGFSTSGYFCPQCRSK
YCELPIECKACGLTLVSAPHLARSFHHLFPLDLFQEIQVVDLQDTDDRFCLACQAEFRDQ
TVYRCPRCEKLFCIECELFIHESLHTCPGCTSCRPKRTFTTFHQ
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagcagaggaagagactgagaagacttacatctgggagggagactatgaacga
acttgggaggccatcaaagaagatgaatcagggtccttgcagacagtggtggatgacatc
atccatcgagccaagagaaggcgcttgcttgacagacctgccaatgtcagacttggaatg
atgcggcatttgtttgttgtattggatatgtccaaatccatggaagatcaagatttaaaa
ccaaacagactggcatcatcagtaaagctgttggaacattttattgaggaatactttgac
caaaatccaatcagtcagattggtgtactgacgacctgtaacaaacgggctgaaaagctg
acagaacttggaggcaacccaaagagacacattgccgcattacagaaatgtgtggaccag
ccttgttccaaggaaccttcaattcaaaactcactagagctagcagcaaccacactaaga
catatgccaggtcatgcaagtcgtgaaattttaataatccttggcagccttacaacatgt
gatccaggaaacattcatgaaactatcaaggccatgaaagacttaaatgtaagatgttca
gtcattggtctgtctgctgatgtcagggtttgtagaaagttgtgcgatgagactaaaggt
acttatggtgttatcttagatgaacatcactttaaagaactgctccttgagcatgtcaca
ccgcctccagctacaacaaatactgaatcttcactgatcagaatgggttttcctcagcat
caaattcacactgagaaaaataaaattgaacagccatccatgtgtatgtgtcatatggat
tccaaaggttctcagggtttcagtacatcaggatacttctgtccacagtgtcggagcaag
tactgtgaactgcccatcgagtgcaaagcatgtggtttaacgttggtttcagcccctcac
ctagcaagatctttccatcacctgtttccactggatctattccaagaaatacaagttgtt
gaccttcaggacacagatgacagattttgtctagcatgtcaagcagaattcagagaccaa
acagtgtacagatgtccaaggtgtgagaagctattctgcatagaatgtgaactcttcatc
catgaatccctgcacacttgccctggctgtacaagctgccgaccaaagcgaacattcaca
acttttcatcagtga
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