Ptychodera flava: 139139008
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Entry
139139008 CDS
T10724
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pfll Ptychodera flava
Pathway
pfll03018
RNA degradation
Brite
Enzymes [BR:
pfll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139139008
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
139139008
Spliceosome [BR:
pfll03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139139008
Complex C
U4/U6.U5 tri-SnRNP related factors
139139008
Ribosome biogenesis [BR:
pfll03009
]
Eukaryotic type
Pre-60S particles
Helicases
139139008
Transfer RNA biogenesis [BR:
pfll03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
139139008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139139008
NCBI-ProteinID:
XP_070563794
LinkDB
All DBs
Position
8:30049583..30065896
Genome browser
AA seq
1039 aa
AA seq
DB search
MADAFGGEDLFSVFGEESSKEKPKSKEKRGKDRGGKSHKSSSSEVIVGNAVPKSSGIKRE
LGASANNESESKRSKVVSSLHITEDFAPSENLPQVKVLPVETLEACTHEVAVPHDYDYEP
LKPTGSKAAKEYPFILDPFQKEALKCLENNQSVLVSAHTSAGKTVVAEYAIAMSLRDRQR
VIYTTPIKALSNQKYRELYEEFQDVGLMTGDVTINPSASCLVMTTEILRSMLYRGSEIMR
EVAWVVFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPC
HVVYTDYRPVPLQHYLFPAGGDGLHLVVDENGEFRDDNFNAAMRVLRDAGDAAKGDQAMR
GRKGGTKGPSNCFKIVKMIMERNFAPVIVFSFSKKECEAYALQMSKLDFNTSSEKGLVEE
VFNNAIDCLSDEDKKLPQVEHVLPLLRRGIGIHHSGLLPILKETIEILFSEGLIKALFAT
ETFAMGLNMPARTVLFTNPRKFDGKDFRWITSGEYIQMSGRAGRRGLDDRGIVILMIDEK
MSPGAGKTILQGQPDPLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYSAIPEMF
EKLKKLEDEYNSEVIPNEESIEAYYKIRQQLDKLGKEVQSFINQPKYCLPYLQPGRLVRV
KNDDDDFGWGTVINFQKKANQSKANPKEPLYIAEVLLNCSKDSIKNAATESAKPAKPGEK
GEMVVVPVMLHLLVHISSIRLYIPKDLRPYDNRQSVGKSIQEVKKRFPDGIPLLDPIDDM
GIRDTALKKVVEKIEAFEHRMYSQPIHNDPQLQKWYNMYEKKAQLGAEIKGVKRELKKAK
TVLQMDELKCRKRVLRRLGYATASDVIEMKGRVACEISSGDELLMTEMIFNGVFNELKVE
QIVALLSCFVFQEKANEMPKLTEELSGPLRQMQESARRIAKVSDEAKLDIDEEDYVDSFR
PHLMDVCFAWANGASFAQICKMTDVFEGSIIRCMRRLEELMREMCQAAKAIGNTDLENKF
AEGITKIKRDIVFAASLYL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcattcggaggcgaggatctcttcagcgttttcggggaagagagctcaaaa
gagaagccaaagagcaaagaaaaacggggaaaggacagaggaggaaaatctcacaagtcg
agttcatcagaagtcatcgtgggaaatgcagtgcctaaaagttcaggaatcaaacgagag
ttgggagcaagtgcaaataacgagagtgaatccaagagatcaaaagttgtatcttcttta
cacatcacagaagactttgcgccatcagagaacttaccccaagtgaaagtgttacctgtt
gaaacactagaagcatgcacccatgaggtagccgtgccccatgactatgattatgagcca
ctgaaaccaacaggcagcaaagcagctaaggagtatcctttcatcttggatcctttccag
aaagaagctttgaaatgtttagagaacaatcagtcagtgttggtctctgctcacacatcg
gctggcaagacagtggttgcagaatacgccatagccatgtctttacgagatcgccagaga
gttatctacaccacaccaatcaaagccctcagtaatcagaaatacagagaattgtacgaa
gagttccaagatgtcggtctgatgactggtgatgttaccatcaacccgtcagccagctgt
cttgtcatgacaaccgagattcttcgaagtatgttgtacagaggttcagagatcatgaga
gaggtagcatgggttgtgtttgatgaaatccattacatgagagacaaagagcgtggtgtt
gtgtgggaagagactatcatcctgctgcctgacaatgtacactatgtgttcctgtcagcc
accataccaaatgccaagcagtttgcagagtggatctgccatctacacaaacagccatgt
catgtggtctacacagattatcgaccagtacctctacaacactatctcttcccagctggt
ggagatggccttcatcttgtcgttgatgaaaatggtgaattccgtgatgacaatttcaat
gccgcgatgcgtgtgcttcgtgatgctggggatgccgccaagggtgaccaagcaatgaga
gggaggaaaggtgggaccaagggtccatccaactgcttcaagatcgtaaagatgatcatg
gagaggaactttgcaccggtcattgtcttcagtttcagcaagaaagagtgtgaggcgtac
gcactacagatgtctaagttagattttaacacgtccagtgagaagggtcttgttgaggaa
gtgttcaataatgctatcgactgtctttctgatgaagacaagaaactaccacaggtagag
catgtacttccactgttgagaagaggtataggaatccatcattcagggttgctgcccatc
ctcaaggaaaccattgagattctcttctctgaaggactcatcaaagcactctttgcaacg
gagacttttgccatgggacttaacatgccggccaggactgtactcttcacaaatcccagg
aaatttgacggcaaagacttcagatggatcacatcaggagaatatattcaaatgagtgga
cgtgccggaagacgtggtcttgacgacagaggaattgttattcttatgatagatgagaag
atgagtccaggtgccggcaaaactattctccagggccagccagatcctttgaatagtgca
ttccatctcacgtacaacatggttctgaatttactccgagtggaggaaatcaatccagag
tacatgttggagagatcgttttaccagttccagaactactctgcaattcctgaaatgttt
gaaaagttgaagaaacttgaagatgagtacaactctgaagtgattcccaatgaggagagc
attgaagcatactacaaaataaggcagcaattagacaaactaggcaaagaagtacaaagt
ttcatcaatcaaccaaaatactgcctgccatatttacagccaggaagactggtcagggtg
aaaaacgatgatgatgactttggctgggggactgtcatcaacttccagaagaaagcaaac
cagagcaaggccaacccaaaggagcctttgtacatagctgaagttctactgaactgcagc
aaagatagcatcaagaatgctgccacagaatctgcaaaacctgccaagccaggtgaaaag
ggagaaatggttgtggtaccagtcatgttgcatcttttggttcacattagcagtatcagg
ctctatataccaaaagatttgcgaccgtacgacaacagacagagtgttggaaagtccatc
caggaagtaaagaagagatttccagacggcataccgttacttgatcccatagatgatatg
ggaatcagagacactgccctcaagaaagtggttgaaaaaattgaagcatttgaacaccgc
atgtactcgcagccaattcacaacgatccacagcttcagaagtggtacaacatgtatgaa
aagaaagctcagcttggtgcagagataaaaggtgtgaagagagagctgaagaaagccaag
accgtcttacagatggatgagttgaaatgtagaaagagggtcctcagaagactagggtat
gccacagcatcagatgtcatcgaaatgaaaggaagagtagcctgtgaaatcagcagtggt
gatgaactgctgatgacagagatgatctttaacggtgtcttcaatgaactcaaagtagag
cagattgtggctttgttgagttgttttgtcttccaagagaaagccaacgaaatgcccaaa
ctgactgaggaactgtcaggacctctcagacagatgcaggaatctgctcgcagaatcgcc
aaggtcagtgatgaagccaaacttgacattgacgaggaagattacgtagactcattccga
ccacatttgatggatgtctgctttgcgtgggctaacggggcaagctttgctcaaatctgt
aaaatgacagacgtctttgaaggaagcattatccggtgcatgcgtcggctggaagaatta
atgcgtgagatgtgccaagctgccaaagccatcggtaacaccgatctagaaaataaattt
gctgaaggtataacaaaaatcaagagagacattgtatttgctgcaagtttgtatctctag
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