Ptychodera flava: 139139391
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Entry
139139391 CDS
T10724
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
pfll Ptychodera flava
Pathway
pfll03008
Ribosome biogenesis in eukaryotes
Brite
Ribosome biogenesis [BR:
pfll03009
]
Eukaryotic type
Pre-60S particles
RNases
139139391
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139139391
NCBI-ProteinID:
XP_070564394
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Position
8:43213475..43429996
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AA seq
1171 aa
AA seq
DB search
MLPSLGYFRGTECPFFANGLCQRPYCHFRHVKKDGQLQSTTLLDVIWDDSTTSSLDINGK
KQQSSINKSTNITAANTEFTYVPTPLSECNKEVPEYDPTDANTPLEEAITYSGDQTTLTE
YKPSAVTSYKPTPVQKNKKKHSHTYSISHTKNVSDLEYDPMSNFCTPMTPRKTKSTGSAV
SDFAEEPKFSDGEEELVEGDSTSQGQKTDTTDTVSEMTGFALTNILRVECTGASVNSVVY
VDKADTTQERCNQMVSEELQNDNDKVKSTSQNITDKKHRKVSDKESQMSNDGNIIKERSK
LEGRKDKNVFEGKKDGNRDGIKKQKKHALQSSGKNIGTTKTESRSGKQSGISHEKEDLDT
VKKTSKLSFEPSSGKDGKKKCGNLGLPDEKCETSLPSTCDGNVNKTVQICKPVQKRKRSA
AGCIETVTPLSKKKRIQTSEHRTSTQMKSKSHISKKSQKQIDCSMKDGKSSRKKDKSTAH
NLSSKSNQAKKKKNSGRKMQKQRSVDLFGEDSDIDSDMIKEDCDKRGKKNKHNEHQLCDD
SDVDVGKHSSESDTEHFANMIDESDLEALTEHDTYEECLQIFNDQTQKGEEAVKAETKKK
SHQCNSSDGYKEKKTLLETEESSSNVRNRQRIAHQAKFDSSSRLKKIKVNPHIQPTPAQV
CHNRYLAVQKHMEEQMAVSSRVNLADKSPRMKTSSQEDTTKNNQATKNTTFVLKKESQTL
SKTHQKNEKRKAHVPKVILASKPRPIIPVEYGSKVPANIRQRYLNTFIDECLKFCQGEEE
AYSMALTEEKTVYQRCSSRNVYLNLCINTVKRLRSLQPQSTSEAKSPTSPRKTISHEAVL
GGKKATLTTFTVHRSGHHHISSNLKFEGAELYERLKPYILSEQQLQENGFPRPSPGQPGL
AVITQEQKKQHGFSDSNQRICDRCGKTYLVRAGGQYITKEECIYHWGRLWKKRTGGMIES
RYSCCQGDVQSKGCCVCKLHVNGNKNNDLRGFMKTIAKSPPDDGNPGIYALDCEMCYTTI
GLELTRVTVTDEKCEEVYDTLVKPVNPIIDYNTRFSGITEEDLKSVSTILHDVQAVLLNK
FSADTILIGHSLESDLLALKMVHGTVIDTSVVFPHKQGPPYKRALRTLMAEYLNKIIQND
ASGHDSKEDANSCMQLMIWKVKEDAKTKKYF
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgttgccatcattaggttactttcgagggactgaatgtccgttctttgcgaacggactc
tgtcagcgcccctactgtcattttcgacacgtgaaaaaagatggacagttacagagcact
accttactggatgtaatttgggatgacagtacaacatcatcattggatatcaatggcaag
aaacaacagtcatcaattaacaaatcaacaaatattacagctgcaaacacagaatttaca
tatgttcctacacccttgtcagaatgtaataaagaagtacctgagtatgatccaactgac
gcaaacacacctctggaagaagcaatcacatattctggagaccagacaactttaacagag
tataaaccatcagcagtgacatcatataaaccgacacctgttcagaaaaataaaaagaag
cattcgcatacatacagcatttcacatacaaaaaatgtcagtgatttagaatacgatcca
atgtcaaacttttgtacgcctatgacacccaggaaaacaaagtctacaggtagtgcagta
agtgattttgcagaggagcctaagttttcagatggtgaggaggagttggttgaaggtgac
agcacatctcaaggtcaaaagactgatacaacagacacagtcagtgaaatgactggcttt
gcattgacaaatatattaagggttgagtgtactggagcatctgttaactctgttgtttat
gtggataaagctgatacaactcaggaaagatgtaaccaaatggtatcggaggaattgcaa
aatgacaatgacaaagtaaaaagcacatcacaaaacatcacggacaagaaacaccgcaaa
gtttctgataaagaatcacaaatgtctaatgatggtaatatcatcaaagaaagaagcaaa
ctggagggcagaaaagataagaacgtttttgaagggaaaaaggatggcaacagagatgga
attaaaaaacaaaaaaaacatgcattgcaatcaagtgggaagaatattggaacaacaaaa
acagaaagtaggtcaggaaaacaatcagggatttcacatgaaaaagaagatttagatact
gtaaagaaaacaagcaaactgtcctttgaaccgtcgtcaggaaaagatggcaagaaaaaa
tgtggaaaccttggacttccagatgaaaagtgtgaaacttctctgccaagtacatgtgat
ggaaatgtgaacaagactgtccaaatttgtaaacctgtacagaaaagaaaaagaagtgca
gctggatgcatagagactgtaacccctttgagtaaaaagaaaaggatacagacaagtgag
catcgaacttcaactcaaatgaagtcaaaatctcatattagcaagaaatcccaaaagcag
attgattgcagtatgaaagatggcaaaagttccagaaaaaaggacaagagtacagctcat
aacttgtcttccaaatcaaaccaggctaaaaagaagaaaaactcaggaagaaaaatgcaa
aaacaacgcagtgtggatttgtttggtgaggatagtgacattgacagtgacatgataaag
gaagactgtgacaaacgaggaaagaagaataaacacaacgaacaccaactttgtgatgat
agtgatgtagatgttggcaaacactcttcagaaagtgatacagaacattttgctaacatg
attgatgaaagtgatttggaagcattgactgaacatgacacttatgaagaatgtctacag
atatttaacgatcaaacccagaaaggagaggaagcagttaaggcagaaaccaagaaaaag
agtcaccagtgtaactccagtgatggctataaagagaagaaaacacttctggagactgaa
gaatcttcttctaatgtcagaaacagacaaagaattgcacatcaagcaaaatttgatagc
tccagcagattaaaaaagatcaaggtgaatcctcatattcaaccaacaccagctcaagtg
tgtcataatagataccttgctgtgcaaaaacatatggaggaacaaatggctgtttcaagc
agagtcaacctggctgataaatctccaagaatgaaaacttcatcacaagaagataccacc
aagaacaaccaggcaacaaaaaacacaacttttgttttaaaaaaggagagtcaaacactc
agtaaaacacatcaaaagaatgaaaagagaaaagcacatgtacccaaagttatcttagcc
agtaaaccaagacccatcatcccagtcgaatatggcagtaaagtacccgctaacatacga
caaagatatctaaacacatttattgatgaatgtctaaagttctgtcaaggtgaagaggaa
gcttacagtatggctttgacagaagagaaaactgtgtaccagagatgttccagtcggaat
gtatatttaaatttatgcataaacactgtcaaaagattaagaagtctacaaccacaaagc
acaagtgaagcaaaatcaccaacatccccaaggaaaaccatatcccatgaggctgtactt
ggaggcaagaaagcaaccctaacaacgtttactgttcataggtctggtcaccaccacatc
tcttcaaatcttaagtttgaaggagcagaattgtatgaaaggcttaaaccatatatatta
tcagaacaacaacttcaagaaaatggtttcccaagaccctcaccaggtcaacctggttta
gcagttattacacaagaacagaaaaagcagcatggattttctgatagtaatcaaaggatt
tgtgatcgatgtggtaaaacatacctagttagagctggaggtcaatacataacaaaagaa
gaatgtatttatcactggggaagactctggaagaagagaactggtggaatgatagaaagt
agatattcttgttgccaaggcgatgtccagagtaaaggttgctgtgtttgtaagcttcat
gtcaatggaaataaaaataatgatctacggggatttatgaagaccatagcaaaatcacca
cctgatgatggtaatcctggtatttatgcgttggactgtgaaatgtgttatactactatt
ggcttggaattaacaagagttactgttacagatgaaaaatgtgaggaggtatatgataca
ctggtaaagccagtaaatccaatcattgattataacaccaggttcagtggtatcactgag
gaggatcttaagtcagtttcaacaattttacatgatgttcaagcagttttacttaacaaa
ttcagtgctgatacaattttaataggacacagcctagaaagtgacctgcttgctctgaag
atggtccacggtacggtgattgatacctcagtggtattccctcacaaacaaggtccacca
tacaaaagagcattgagaacattaatggcggaatatctgaacaaaataattcaaaatgat
gcatctggtcatgacagcaaagaagacgccaactcctgcatgcagcttatgatttggaaa
gtaaaggaagatgcaaagacaaagaaatatttttag
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