Ptychodera flava: 139139742
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Entry
139139742 CDS
T10724
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2-like
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pfll Ptychodera flava
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfll03009
]
139139742
03012 Translation factors [BR:
pfll03012
]
139139742
Enzymes [BR:
pfll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139139742
5.6.2.5 RNA 5'-3' helicase
139139742
Ribosome biogenesis [BR:
pfll03009
]
Eukaryotic type
Other ribosome biogenesis factors
139139742
Translation factors [BR:
pfll03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
139139742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
ResIII
Viral_helicase1
zf-AN1
nSTAND3
DEAD
ABC_tran
Glyco_tranf_2_3
UvrD-helicase
nSTAND_NTPase5
AAA_22
AAA
AAA_16
AAA_25
Flavi_DEAD
AAA_7
cobW
PhoH
REV
Adeno_IVa2
RuvB_N
UvrD_C_2
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
139139742
NCBI-ProteinID:
XP_070564709
LinkDB
All DBs
Position
9:2229672..2277413
Genome browser
AA seq
1011 aa
AA seq
DB search
MTAVQDFTEKTLKLLELERNEDIEETRKLWISSSAKELQKRGLCLLKLQITSMRTGLYGR
TLVVMELARHFTDRKLPCHSMTSGDIIGLSLSQSHHCGDMIASGILTKVREVSVTVAFDE
SYDSLSLSEQDLYTITKLANDVTYKRIKKALNDMDGRHTVRSYHLMDVLFGIAPPQVTTM
NQTQELTQNATFYNQSLDDSQKEAVNFAIKQKEVAVIHGPPGTGKTTTLVEIILQSVKLQ
MKVLACAPSNIAVDNLVEKLGDHVKIVRLGHPARISHGIHKYSLDAVLSRSDAAQIVEDV
RKDIDKTQIKMLKLQDKSEKHKLRQETKQLRKELKQRENKAIREILSAADVVLATNISAS
LDGPLKHLKEDHFDMVIIDECAQALEASCWIPLLQVSKCILAGDHHQLPPTIISNQASKD
GLSVSLMERIVNLHGDSVVKMLTVQYRMHNAIMTWASHQLYQNKLTAHPSVANHLLRDLP
DVEDTEVTSVPLLLIDTAGCDLYELDLEDEMSKANEGEVDLVEVHVDALVCAGVKASDIA
VIAPYNLQVDMLKMRLSGKYANLEIKSVDGFQGREKEAVVITMVRSNPKGIVGFLSENRR
MNVAVTRARRHLAVICDSETVSHDHFLKSLTDYMTDNGEVHTAFQYIQNGLIGNHGPETQ
YLQRGGSHGPDTQYLQSSGKQTIKQKATRHDAKETTKTKIVKSRGFLNETHKSEASDPEL
PIIEKQIEDFICDFEQLEFTFPHTLTSHQRYLVHQAAEQRGLSHYSQGDGVERCITVSKI
KHKTLDSDLKSTKNEDKNTDSRITDNDGNDEAECENEEDDEITVTTVTKTMATELDKETD
SAVCPEDYFRCTICKKIIPSLNRLLHEINCEFQNKVKTNVTQDSAKSKDKKKRKKKAIPE
NAQNDDIDKLLEQVTKRDYLCNSSGCKESTRTFGQTCEFCKKMYCFSHHMAEVHGCGVQA
KQSARRRAQGNAMKTSKDKPLDPAARANLQRKMDKKMNEFADKRRPKPSKK
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggttcaagactttacagaaaagactctgaagcttcttgagcttgagagaaat
gaagacattgaggaaaccaggaaattgtggatttcaagttcggcaaaggaacttcaaaag
agagggttatgtcttcttaaactgcaaataaccagcatgcgtactggtttatatggccgg
accttggttgtaatggagttagcaagacatttcactgacagaaaacttccatgccattca
atgacatcaggtgatataattggtttatccttgtctcaaagccatcattgcggagatatg
attgcatctggaattctaacaaaagtgagagaagtttctgtgactgtagcatttgatgag
tcttatgactccttgtcgctgagtgaacaagatctgtacaccatcactaagttggctaat
gacgtcacttacaaaagaatcaaaaaagctcttaatgacatggatggaaggcacactgta
agatcatatcatcttatggatgtgttgtttggcattgcacctcctcaagtaactacaatg
aaccagacacaagaactgactcaaaatgcgacattttacaaccaaagtcttgatgattct
cagaaggaagctgtcaattttgccatcaaacagaaagaggttgctgtcatccatggcccc
ccaggtacaggcaaaacaacaactcttgtagaaatcatattacagtctgttaaacttcaa
atgaaggtactggcctgtgctccatcaaacatagctgttgataaccttgtagaaaagtta
ggagatcatgtgaaaattgtgagacttggtcaccctgcaagaatctcacatggaattcat
aagtattcattggatgcagtgttgtcaagaagtgatgcagcccagatagttgaagatgtg
agaaaggatatcgacaaaactcaaatcaaaatgctgaaactccaagacaaatcagagaaa
cacaaattgagacaagaaactaaacagttgaggaaagaactaaaacaaagagaaaataaa
gccatcagagagatcctgtcagctgctgatgttgtcttggcaaccaatatcagtgcgtcg
ttggatgggccattgaaacatttgaaagaagatcactttgatatggtcatcattgatgaa
tgtgctcaggcattagaagcaagttgttggattccactgctgcaagtgtctaaatgcatc
ttagcaggagatcatcaccaacttccaccaacaattatatccaatcaagcttccaaagat
ggcctaagtgttagtttaatggaaagaattgtgaatctccatggtgatagtgtggtaaag
atgttgacagtacagtacagaatgcacaatgctattatgacatgggcatcacatcaattg
tatcagaataaattaacagcacatccatcagttgccaaccatcttctcagagatttgcct
gatgttgaagatactgaggtgacatcagtcccattgttgctaattgatacagctggatgc
gatctctatgagttagacttggaggatgaaatgtccaaagctaatgaaggagaggtagac
ttagttgaagttcatgttgatgcattggtctgtgctggagttaaagcatctgatattgct
gttattgctccgtacaatttacaggttgacatgttgaaaatgaggctctctggaaagtat
gcaaatttagaaatcaagtctgttgatggatttcaaggacgagaaaaggaagctgttgtc
ataacaatggtcagatcaaatccaaagggaattgtagggtttctttctgagaacagacga
atgaatgtggctgttacaagagcaaggaggcatttagctgtgatctgtgattcagaaact
gttagtcatgatcatttcttgaagagtttaactgattacatgactgacaatggagaagta
catacagcatttcagtatatacagaatggtttgattggtaaccatggcccagagacacag
tatctgcagcgtggtggtagccatggcccagacacacagtacctgcagagtagtggtaag
caaactattaaacagaaggcaaccagacatgatgcaaaggaaacaacaaaaacaaagatt
gtaaaatcaaggggctttcttaatgagacacacaaaagtgaagcaagtgatcctgagtta
ccgatcattgaaaagcaaattgaagactttatttgtgattttgaacaattagaatttaca
tttccacataccctgacttctcatcagagataccttgtacatcaggctgctgaacaaaga
ggattgagccattacagtcaaggagatggtgttgaaagatgtatcactgttagcaaaatc
aaacacaagacacttgattctgacttgaaaagtacaaagaatgaagacaaaaatacagat
tctaggattacggataatgatggaaatgatgaggcagaatgtgaaaatgaggaagatgat
gaaatcactgttactacagttacaaaaaccatggcaactgaacttgataaagaaacagac
tctgcagtatgtccagaggactacttcagatgtacaatttgcaagaagataataccttca
cttaatcgtttactacatgaaataaactgtgaatttcaaaataaagtaaagaccaatgtg
acacaggacagtgccaaatcaaaagataagaagaaaaggaagaagaaagcaatacctgag
aatgcacaaaatgatgatattgataaattgttagaacaagtgacaaaaagagattattta
tgcaacagtagtggatgtaaagaatcaacaaggacatttggtcagacttgtgaattttgc
aagaaaatgtattgtttttcacatcatatggctgaggtacatggatgtggtgttcaagcc
aaacagtcagctagaagacgtgcccagggcaatgcaatgaagactagcaaggataaaccg
ttggatccagcagctagggcaaatttacagagaaaaatggacaaaaaaatgaatgagttt
gcagacaagcgacgaccaaaaccatcaaagaaatga
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