Ptychodera flava: 139140491
Help
Entry
139140491 CDS
T10724
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
pfll Ptychodera flava
Pathway
pfll03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139140491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfll03019
]
139140491
Enzymes [BR:
pfll01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
139140491
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139140491
mRNA degradation factors
3'-5' decay
Pan complex
139140491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_MABP1-WDR62_2nd
TMD_POM152
Motif
Other DBs
NCBI-GeneID:
139140491
NCBI-ProteinID:
XP_070565894
LinkDB
All DBs
Position
9:26221081..26245619
Genome browser
AA seq
1198 aa
AA seq
DB search
MEFTSEQFPEFGGEEYHPEGEGVEVPSPDGYMPGQMELPVGEEFPEEHPAGLDLNGGVPV
TPGASYHEMHTVLADGGDRFGVTAVAFDLHEELLWMGNQGGHITSYLGLNMQKYTSFQVH
ASDEIHQITTCEAGVLALTSDNLRCCTRQGIRLYDHRGENIHDMQCMLQTSPSTLLLGGH
HDKLIEFDLAAVQEANEYAIEDPGVAILRQSNYNRLICCGDTSGKITLRDPDTLKSEHVL
EAHAGTLSDFDVHGNHLVTCGFSHRLGNLAIDRFLKVYDMRTMRALPPLQLPIEPLFLRY
VPTYTSRLAVVTQHGQFQLLDPCGLVTPGNMLLDQVNILGEIILAFDVSSTCQALAFGEA
GGYVHLWTDREDAHYNAFSNETELADPVEHLRPIHIDDELTPLSTIPMPFCDGPLLSDWP
ESNCFAVHRRPPQIDPEIIRSMNMVQFIGYAPNPGNKRRNQVAYREVSSSGKGKSGKTVP
QSPIGRDVDPFMCIVPKKYRKVEIKYSKLGVDDFDFKHYNKTNFAGLETHIPNAYCNSML
QVLYFIEPLRCALESHLCSKEFCLACELGFLFHMLDLSKGNNCQGTNFLRAFRTIPEASA
LGLILGDAEESTGKANFRRLIQNWNRFVLQQIEQDTLEQDESALALPATMQSFSSSTSVV
TRLFQTNAENISQCKCGKENTRNGATLLFNFTYPDCSPPGPGKPPKQFSFATVAKNSMSL
EQTMQAWCDNCKKYQPTVQVKSLKCLPDVLVINCQIETAKDLEFWKIQQELIGVVEEKEG
ASDKISKPCRYGRACTRKGCKFNHEIMDSPERLAFELSEMENGNRKSWVPLGLKMKLSSD
RTLEVQDVFEEKDAFDSDDFKLYNLHASVAHIQDLKTGGNLVSHIQVGPTYHKRKEGVTH
SNWYLYNDFAILPIEPHEAVQFNLEYKIPCILYFIRRDLTDDYDCSITSPIEASVLLAEA
SLAKGAMKQHITFTPLQANELPEQGDCVGLDAEFVTLNQEEAEIRSDGTRSTIKPSQMTA
ARITCVRGYGDLEGVPFIDDYISTQEQVVDYLTQFSGIKPGDLDATISSKHLTTLKSTYL
KLRYLIDQGVIFVGHGLKKDFRVINVLVPKDQVIDTAFLFSLPKQRIPSLRFLAWFFLGI
NIQGSTHDSIEDARTALQLYKKYKDISNEGKERENWEATLKNLYEKGRKYGWKVPDDE
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggaattcaccagtgagcagtttccagaatttggaggtgaggagtaccatccagaggga
gagggcgtcgaagtgccctcgccggatggatacatgcctggtcagatggaattgccggtt
ggtgaagaattcccagaggagcatccagcagggctggatctcaatggtggagtgcctgta
acaccaggtgccagctaccatgaaatgcatactgtattggcggatggtggggacaggttt
ggcgtgactgcagtggcgtttgatttgcatgaagagctattgtggatgggcaaccaaggg
ggacacatcacatcatatcttggtcttaacatgcaaaagtacacatcattccaagtgcat
gcaagtgatgaaattcatcagataactacctgtgaagctggtgtactggcgttgaccagc
gacaacctccgatgttgtaccaggcaaggcatccgactctacgaccacagaggtgagaac
atccatgatatgcagtgcatgctacagaccagcccatcaactctactgctcggtgggcac
catgataaacttattgagttcgatctagccgcagttcaggaagccaatgaatacgccatt
gaagatcctggcgttgccattctcagacagtcaaactataatagattgatatgctgtggt
gacaccagtggaaagatcacgctacgagatccagacaccctaaaatcagagcatgtcttg
gaagcacatgccgggactctctctgactttgatgtccatggcaaccatcttgtgacctgt
ggtttctctcacagactgggtaatctagccatagatagatttctgaaggtctatgatatg
agaacaatgagagccttaccaccactacaacttccaatagaacccttgtttctcagatac
gtaccaacctatacatctaggctagccgtcgtcactcagcatggtcagtttcagttgcta
gatccgtgtggcctagtaacacctggtaacatgttactggatcaagtgaacatcctggga
gagataatcctggcttttgacgtttccagtacctgccaagcactggcgtttggagaagca
ggaggttacgttcatctgtggactgatagggaagatgcccactacaacgccttctccaat
gaaactgagctagctgatccagttgaacatctaagacccatacacattgatgatgagctg
acaccgttgtccaccataccgatgccattctgtgatggacctctgctgtcagattggcca
gaatctaactgttttgcagtccatagacgcccaccacagatagaccctgaaatcattcgc
tcaatgaacatggtgcagttcatcgggtacgcaccaaacccaggaaataaaagaagaaac
caagttgcatacagggaagtgtctagcagtggcaagggtaaaagtggcaaaactgtacct
cagtctccaatcggaagagatgtagacccattcatgtgcattgtaccgaagaagtacaga
aaagtggaaatcaagtactccaagctgggtgttgatgactttgactttaaacattacaac
aagactaactttgcgggactggaaactcacatacccaatgcttactgcaactccatgtta
caggtgctgtatttcatagagccgttacgctgtgccctagagagtcatctctgctccaaa
gaattctgtctggcatgtgaacttggctttctcttccatatgttggatctctccaaggga
aacaattgtcagggtacaaactttttgagggccttccgaacaatcccagaggcatctgct
ctgggtctgatcttgggagacgctgaggaatccactggtaaagccaactttagaagactg
atccagaactggaacagatttgtgctgcaacaaattgaacaggacactctagagcaggat
gaatcagccctagcattgcctgccaccatgcagagtttcagcagctccacctctgtggtg
accagactgttccagaccaacgctgaaaatatcagtcagtgtaaatgtggcaaagaaaac
acccgcaatggtgccactttgctcttcaatttcacctaccctgactgttcaccaccaggt
ccaggcaagccgccgaagcagttttcatttgccacagtcgccaagaatagtatgagtcta
gagcaaacgatgcaggcgtggtgtgacaactgtaaaaagtatcaacccactgtccaagtc
aaatcattaaagtgtttgccagatgtgcttgttatcaactgtcaaatagaaactgccaag
gatttagagttctggaaaatccagcaagagcttattggtgtggtggaagagaaggaaggg
gccagtgataaaatcagtaagccatgccgctatggcagagcctgcaccagaaaaggatgc
aaattcaaccatgaaattatggacagtccggagagattagcttttgaattgagtgaaatg
gaaaatggtaacagaaagtcttgggtgcctctgggtttgaagatgaaattgagcagtgac
agaacactagaagtacaagatgtctttgaggagaaagatgcatttgattctgatgacttt
aaactttacaacttacacgcctctgtcgcccacatacaagatttgaaaactggcggcaac
cttgtctctcatatccaggttggaccaacataccacaagaggaaagagggtgtcacacac
agcaactggtacctgtacaatgactttgccatcttacccattgaaccccatgaagcagtc
cagttcaacttagagtacaaaataccctgcatcttatacttcatacgcagggacctcact
gatgattatgattgctcaataacaagtcccattgaagccagtgtgttattggctgaagca
tccctggctaaaggtgccatgaagcaacacataaccttcacaccactgcaagctaatgag
ttgccagaacagggtgactgtgttggacttgatgctgagtttgttactctcaatcaggaa
gaggctgaaattcggagtgatggaacgcgatctacaatcaaaccaagccaaatgacagct
gccagaataacctgtgtcagaggttatggtgaccttgaaggggtacctttcatcgatgac
tatatctccacccaagaacaggttgtggactacctaactcagttttcaggaataaaacct
ggcgatctggacgctactatttcttctaaacatctgactactttgaaatccacctatttg
aagctgaggtacctcatagatcaaggagtcatctttgttggtcatggactcaagaaggac
ttcagggttatcaacgtgctggttccaaaagaccaggtgattgacacagcctttctgttc
agccttcctaaacagcgtattccgtcactgcgtttcctggcatggtttttccttggcatc
aacattcaaggttccacccacgacagcatagaggatgccaggaccgccctgcagttgtac
aagaaatacaaggatatcagcaatgagggaaaggagagggagaactgggaagccacgttg
aaaaatctgtatgagaaaggaaggaagtatggctggaaagtgccggatgatgaatga
DBGET
integrated database retrieval system
