Ptychodera flava: 139140517
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Entry
139140517 CDS
T10724
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pfll Ptychodera flava
Pathway
pfll03040
Spliceosome
Brite
Enzymes [BR:
pfll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139140517
Spliceosome [BR:
pfll03041
]
Complex C
Other components
Step II factors
139140517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
PhoH
AAA_30
RSRP
ABC_tran
TsaE
OB_RRP5_4th
UvrD-helicase
AAA_16
Motif
Other DBs
NCBI-GeneID:
139140517
NCBI-ProteinID:
XP_070565948
LinkDB
All DBs
Position
9:27024931..27045486
Genome browser
AA seq
1206 aa
AA seq
DB search
MDDAVDLETLEHLSLVSKVCTELDNHLGLNDKDLAEFIINLAEKNETFESFKSVLEENGA
EFPDSFISNLLRLIQRMKPKKTQDASQTEETGGESSKKEKKRKAFPGLCIPDEMVKKEVV
DEEEDQKVALDALDELEALMPKASSSTDANDKEEREKRRNRSRSRSRERGKHKDKKKDKH
RSRHKDRRRDRSRSRSRERDRDGHRDRDRHRSRSRSRDRDRDRTREKDKKDERYRDRFVD
RAPPADPEIGHIYEGKVASIMQFGCFVQLEGLRKRCDGLVHISQLRREGRVSDVNEVVHR
GQKVKVKVLSMTGNRISLSMRDVDQETGEDLNPTSARDTMEPQSNPEDTVRNPDRPSNLP
LVNIQVDDDSLLNTRKVQRLTSPEKWEIKQMLAASCIDKTELPDFDEESGLLLKEDDNSD
EEVEIEMVEEEPPFLKGHGRQSLDLSPVRIVKNPDGTLSKAAMMASALSKERREMKQAQE
RAEADSIPTGMNTSWIDPMPETDRMLGAQIRGIGLTTPDMPEWKRHAFGGNKASFGKKTK
MSIIEQRASLPIYRLKEQLVQAIHDNQILIVIGETGSGKTTQITQYIAEAGYTVKGKIGC
TQPRRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSPETKIKYMTDGMLLRECLIDSD
LSQYSVIMLDEAHERTIHTDVLFGLMKKAVEKRPDMKLIVTSATLDAVKFSQYFFEAPIF
TIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLMEPPGDILVFLTGQEEIDTACEILYE
RMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIYYVV
DPGFVKQKVYNSKTGMDQLVVTPISQAQAKQRSGRAGRTGPGKCYRLYTERAYRDEMLTT
AVPEIQRTNLASTILSLKAMGINDLLSFDFMDPPPTETLIAAMEQLHSLSALDDEGLLTR
LGRRMAEFPLEPMLSKTLIMSVHLACSDEILTIVSMLSVQNVFYRPKDKQSLADQRKAKF
HQLEGDHLTLLAVYNSWKNNKFSNPWCFENFVQARTLRRAQDVRKQLLGIMDRHKLDVVS
CGKNTARVQKAICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEMVVYHELV
MTTKEYMREVTQIDNKWLVEFAPAFFKFADPTKLSKQKKQQRLEPLYNKYEEPNAWRISR
QRYRRN
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgcagtggacctcgaaacattagaacacttgtcacttgtgtctaaagtttgt
acagaactggacaatcatttgggactaaatgacaaagatttggctgagttcatcataaat
ctggcagagaaaaatgagacatttgaatccttcaagtccgtccttgaagaaaacggagcg
gagttcccagactccttcatcagtaatctcttgaggttgattcagcgtatgaaaccaaag
aaaacacaagatgcttctcaaacagaagaaactggtggagaaagttcaaagaaggagaag
aaaaggaaagcattccccggactctgtattccagatgaaatggtcaaaaaggaagttgtg
gatgaagaggaagaccagaaagtagctcttgatgccttggatgaacttgaagctctgatg
ccaaaagcatcatcatctacagatgcaaacgacaaagaggagagagagaaaaggagaaac
agaagccgaagtcgaagcagggaaagagggaaacacaaagacaagaaaaaagacaaacac
cgcagcagacataaagacagaaggagagacagatccaggtcaaggagtagagagagagac
agagatggccacagggacagagacagacacaggagtcgcagcagaagtagagacagagac
agagacaggaccagagaaaaggacaagaaagatgagagatacagggataggtttgttgac
agggctccaccagctgaccctgaaataggacacatctatgagggcaaagtagctagtatc
atgcagtttggctgttttgtacaacttgaaggacttaggaaaagatgtgatggtctggtg
cacatttcacagttgagaagagaaggccgagtttctgatgtaaatgaagttgtccataga
ggtcaaaaagtcaaggttaaagtgctgtcaatgacaggtaaccggataagtctatccatg
cgggatgtggaccaggaaacaggagaagacttgaatcccaccagtgccagggatacaatg
gagccacagtcaaatccagaggacactgtccgcaatccagacaggccctccaacttacct
ctggtcaacatccaagttgacgatgattcgctgttgaacacacgcaaagtgcagaggctc
acatctccagaaaagtgggaaatcaaacagatgctagcagccagctgtattgataaaact
gaattgccggactttgatgaagaatctggattgctgctgaaggaagatgataactctgat
gaggaagttgaaatagagatggttgaagaggaaccaccattcttgaaaggtcatggaagg
cagagtcttgacttgagtccagtgagaattgtcaagaatcctgatggtacactatccaag
gcagccatgatggccagtgccttgtccaaggagagaagagaaatgaaacaagcgcaggag
agagctgaagcagactccattcccactggaatgaatacaagctggattgatcctatgcca
gaaactgatcgtatgttaggagcacagatccgaggcatcggtttgaccacaccagacatg
ccggaatggaaacgacatgcctttggaggtaacaaggcatcattcggtaaaaagactaag
atgtcaatcattgagcagagggccagtcttcccatctatagactgaaggaacaactggtg
caagccatccatgacaaccagattctgattgtaattggtgagacaggcagtggtaagaca
acacagatcacccaatacatagcagaggccggctacacagtcaagggtaaaattggatgt
actcaaccaagaagagtggcagccatgtctgttgccaagagagttgctgaggaatttggt
tgcagactgggacaagaggtgggttataccattcgttttgaagactgtaccagccctgag
accaagatcaagtacatgacggatggtatgttactaagggagtgtttgatagactctgat
ctcagccagtactcagtcatcatgttggatgaagcccacgagagaaccattcacacagat
gtgctctttggactgatgaaaaaggcagtggagaagagacctgacatgaaacttattgtg
acatctgccacgctggatgccgtgaagttctcgcagtatttctttgaagccccgattttc
acaattcctggcagaactttcccggtggaggtgctgtacacaaaggagccagagacagac
tacttggacgcctctctgatcactgttatgcagattcatttgatggaacctccaggtgac
atcttggtgttcttgactggtcaggaagagatcgacacggcttgtgagattctttatgag
cgtatgaaatcactgggacctgatgttccagagctgattatcttaccggtctattcagct
ctacccagcgaaatgcaaaccagaatatttgaaccagcaccacctggcagccgaaaggtt
gtgatagccaccaacattgcagagacctcacttacaattgatggcatctactatgtggtt
gatccaggctttgtcaagcagaaagtgtacaattccaagactggcatggatcaactggtg
gtaaccccgatatcacaggcccaggccaagcagagatccggacgtgccgggaggactggt
ccagggaagtgttacagactttacactgagagggcgtaccgagatgaaatgttaaccact
gcggttcctgaaatacagcgcaccaatctagccagcaccatactgtcacttaaagccatg
ggcatcaatgacttgctgtcgtttgatttcatggacccgccccctactgagacactgata
gcagcaatggaacagctccattcacttagtgcgttagatgatgaaggtctattgacaaga
cttggaaggaggatggcagagtttccattagagccaatgctatccaagacactcatcatg
tctgtccacctagcctgcagtgatgagatcctgaccattgtatccatgctgtctgtgcag
aatgtattctacagaccaaaggacaagcagtcactggctgatcagaggaaagccaaattc
catcagttggaaggtgatcacttgactctattggcggtctataactcctggaagaacaac
aaattctccaatccatggtgttttgaaaactttgtgcaggccaggacactcaggagagca
caggatgtgagaaaacagctgctgggcatcatggacagacataaacttgatgttgtctca
tgtggcaagaacacagcccgagtgcagaaggcgatatgtagtgggttcttccgcaatgcc
gccaagaaagatccccaggaaggctatcgtacccttgttgatagtcaagtagtctacatt
catccttcaagtgcactcttcaacagacaaccagaaatggtggtttaccatgaacttgta
atgacgactaaggagtacatgagagaggtcacacagattgataacaagtggttggtggag
tttgccccagctttcttcaaatttgccgacccgaccaaactcagcaaacagaagaaacaa
cagaggctggagccactgtacaacaaatacgaagaacccaacgcttggcgtatctccagg
cagagatacagacgaaactga
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