Ptychodera flava: 139140929
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Entry
139140929 CDS
T10724
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pfll Ptychodera flava
Pathway
pfll03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139140929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfll03021
]
139140929
03019 Messenger RNA biogenesis [BR:
pfll03019
]
139140929
Transcription machinery [BR:
pfll03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139140929
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139140929
U7-dependent histone pre-mRNA processing factors
139140929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
139140929
NCBI-ProteinID:
XP_070566520
LinkDB
All DBs
Position
9:38931459..38946832
Genome browser
AA seq
689 aa
AA seq
DB search
MAAKRKVDSHIPAEESDQLIIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL
PYFDLIEPDEIELLLISHFHLDHCGALPWFLQKTTFKGRVFMTHATKAIYRWLLSDYVKV
SNISTEQMLYTDKDLEASMDKIETIDFHVETEVNGVKFWCYNAGHVLGAAMFMLEIAGVK
LMYTGDFSRQEDRHLMAAELPSVRPDVLIIESTYGTHIHEKREEREARFTGTVHDIVNRG
GRCLIPVFALGRAQELLLILDEYWANHPELHDVPIYYASSLAKKCMSVYQTYINAMNDKI
KRQITISNPFVFKHISNLRGMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDRRNGVI
IAGYCVEGTLAKHILSQPEEVTTMSGQKLPLKMSVDYISFSAHADYQQISEFLRILKPPH
VVLVHGEQNEMGRLKAAVIREYEDNVDVDIQVHNPKNTQAVELYFRGEKMAKVMGSLAAT
KPTQGTKVSGILVKRNFNYHIMAPSDLSNYTDLAMSTVTQRQSVAYNAPLSLLTYYLTQL
SGDVEHTEVNDKPALKVFKTITLIHEPALGMVTMEWVANAVNDMYADAVLSVIIKVGSDP
SAQKVKPAPPVTYLVYTERLTKLLREMFGEKSLSRTVKGDELIVTVDGKTARIFMDSLEV
KCDEDESLHAMVTSAVTRLHQALNPMADL
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaaagaaaagttgacagccacataccggctgaggaaagtgatcagctcatt
ataagacctctgggagccggtcaagaagtaggcagatcatgtataatgttagaattcaaa
ggaaagaaaataatgttggactgtggaatccatcctggtttgagtggcatggatgccctg
ccatactttgatcttattgagcctgatgaaatcgagttgttactaataagtcattttcat
ttggatcattgtggagcgttgccatggttcctacagaagacaacgttcaaaggccgggtg
ttcatgacacatgccacaaaagctatctatagatggctcttgtcagattacgtcaaagtc
agcaatatttccacagagcagatgttgtacacagacaaggacctggaggctagcatggac
aagatagaaactatagatttccatgtagaaactgaagtcaatggtgtgaagttctggtgt
tacaatgcaggacatgtgttaggtgctgctatgtttatgttagagatagcaggtgtaaag
cttatgtacacaggagatttttccagacaagaagatcggcatttgatggcagccgagttg
ccctctgtcaggccagatgttcttatcattgaatccacctatggtacacacatccatgag
aaaagagaggaacgagaggctcgtttcactggcacagtgcatgacattgtcaatagaggg
ggtagatgtctcataccagtgtttgcactaggaagagcacaggagctgttactcatttta
gatgaatactgggcaaatcacccagagttgcacgatgtgccgatatactatgcatcctcg
ttggccaagaaatgcatgtccgtataccaaacctacatcaatgctatgaatgataaaatc
aaacgacagattacaataagcaacccttttgtcttcaaacacatttccaacctccgaggc
atggaccacttcgatgacattggtccgtctgttgtcatggcgagccctggtatgatgcag
agtggcctgtcgagggagctgtttgaaagttggtgtactgacagaagaaatggagttatc
attgctggttactgtgttgaaggaactcttgccaagcacattttgtctcagccagaagaa
gtgactaccatgtcgggtcagaagttgccactcaagatgtccgttgactacatttcattc
tcagctcacgcagactatcagcaaatcagtgaatttcttagaattctcaaaccaccccat
gtggttcttgtccatggtgagcagaatgaaatgggaaggctaaaagctgccgtcatccgt
gaatacgaggacaacgtagatgttgatattcaggttcacaatcccaagaacactcaggcg
gtggaattgtacttcagaggagagaaaatggccaaggtgatgggcagcctagcagcaacc
aaacctacacagggcactaaggtatcaggaatccttgtcaagagaaacttcaactaccac
atcatggcaccgtcagatttgtccaattacacagaccttgctatgagtacagtcacacag
cgtcaaagtgttgcttacaatgcaccattgtcactactcacatactacctaacacagctg
tcaggagatgtcgaacacaccgaagtcaacgacaaaccggcactgaaagtgttcaaaacc
atcacacttatacatgaaccagcactcggtatggttaccatggagtgggtagccaatgcc
gtcaatgacatgtatgcggatgcagtcttgtctgtcattatcaaagttggttctgaccca
tcagcacagaaagtaaaaccagcaccgcctgtgacttacctagtgtacactgagagattg
actaaactactgcgtgaaatgtttggtgaaaagtcactgagtagaacagtgaaaggagat
gagctgatagtgacggttgatggaaagacagccagaatattcatggatagtttggaagtg
aagtgtgatgaggatgaaagtctccatgccatggttacctctgctgttactaggttacat
caagccctcaatccaatggcagacctgtga
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