Ptychodera flava: 139143870
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Entry
139143870 CDS
T10724
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
pfll Ptychodera flava
Pathway
pfll04382
Cornified envelope formation
pfll04512
ECM-receptor interaction
pfll04518
Integrin signaling
pfll04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139143870
04518 Integrin signaling
139143870
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139143870
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139143870
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pfll04147
]
139143870
00536 Glycosaminoglycan binding proteins [BR:
pfll00536
]
139143870
Exosome [BR:
pfll04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139143870
Glycosaminoglycan binding proteins [BR:
pfll00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139143870
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Endostatin
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
139143870
NCBI-ProteinID:
XP_070570555
LinkDB
All DBs
Position
11:complement(23706288..23821831)
Genome browser
AA seq
1524 aa
AA seq
DB search
MASRIIFSRTVLSALCIFCCALCKPSEAETINLLDVIGFPLPEAITFTKGLGDFPGFHFN
QDANVGRLATVLLPEIFYSDFAILATIRPGTEDGGPVFVVTDSFQSIIYLGVNISSAGEA
KQQISLLYTDLPGTPTQEIASFVVPSFHKRWVRFAITVEGDTVTLYLDCDDTPYDKQTFT
RNVGALTFSGQDTIRLGNSGSGAAFPAKYIGGIQELKISSNPSDAVIYCEVANLNDEESS
GEESGSGDDEDSVPEETTDFLITATQQAYTSQWQISGSGDDMDIEPTEMVELKPVIGPPG
IPGLPGEPGLPGEKGEKGDTGERGDKGEAGQPAPEGQKGEKGEQGTPGVSPPVIKPQKGE
QGEPGLPGPEGREGLPGVAGPPGPKGESGAKGEPGDQGTAGAKGDQGPPGVGIPGPPGPP
GETASEPDEEGFLSVPGPKGEKGESGAAGKPGPTGKPGIEGPPGIQGPKGDKGDTGIGRP
GQPGPPGPPGPPGEDEEEGSGDGSFFPGPEGPEGAEGPIGRPGPPGVQGVPGPAGEPGQA
GPPGPAGAAGIPGFPGPPGSRGRPGEQGLPGPKGEQGVPGKDAEIVTVVGPPGPAGRNGT
DGAQGLPGQQGAAGTPGVSGPPGIQGPVGPKGERGLGGSPGFEGEPGAKGEPGADGVPGQ
PGFAGEPGLPGAIGPIGPAGPVGPAGPPGPPGPPGPSVSVPVEEEEGSGDGSFLKDKKGD
TGLPGVPGAPGAPGAPGPIGLTGPPGPEGPPGQQGPHGFNGTQGERGFQGAQGPQGFKGD
KGEQGPTGEQGIGIRGLPGLPGVPGLKGEDGVCLPAQCTSPIIDPPGALPPGPPGPPGPP
GPIGIPGRPGVPGIPGFNGTANGLVGQKGEPGEVGTIGLPGLTGPRGFPGKPGRQGLKGV
PGSDGAPGQPGVQGPEGPRGEKGEPYTIKDNEFLLLKGDKGKRGRAGPPGSKGEFGLPGR
PGRPGIPGLPGPAGKQGERGEPGFAGIPGLSGLKGEKGETGEAVAIKGEKGDSGPIGLPG
LPGPPGMGPVTEDPSDPASVPRRYNGQDGTPGLPGLPGPTGPKGQKGDIGERGALGPIGL
PGNPGTDGEQGEKGMPGQTGAPGEAGPRGTGGLPGAMGPQGPNGVDGLPGPEGKKGKKGD
TGEPGQPGQKGEPGPPGVGGGTGGSPVQGPAGPPGPPGPPGSPGQDGDAQHGIPGAPGQP
GPQGPPGVGQPGIPGPPGVPGIGIPGSNGEKGMRGPSGQRGVPGPPGPPGPSGGSEDGVP
VGKYTTVATYLTQDDMQAVARMTPVGGLAFIHDRQELYVRVEEGWQIIELGPILPLPPIP
VTAVPGPPSSTPPTPTTGIVDGTNTLHLFALNHPVSGSSLGDSSMRGLRGADFLCFRQAQ
EAGLQGTYRAFLSSKVQDVKSVVRREDRDTPVVNAKNELLFTSWNSIFEGEGGFNDKVHI
YSFDGKDVMVDPTWPQKMVWHGSSASGNRMTDSYCDQWLTDKTDDVGQASSLQSHKLLGQ
EQYACNNDFILLCIQNTVGKVKRK
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaggattattttctctaggactgtgctgtccgcgctgtgtattttttgctgt
gccctttgcaagccatcagaagctgaaacgataaacctccttgatgtcataggatttccc
ttgcctgaagcaatcactttcacaaaaggattaggagatttccccggttttcatttcaat
caagatgccaacgttgggagactggccactgttttattgccagagatcttctacagtgac
tttgccattctagccactattagaccgggcaccgaggatggtgggccggtatttgtagtg
actgattcgttccagtccattatttacctgggagtgaacatctctagcgcgggagaggca
aaacagcaaatctccttgctctacacggatttgccaggaaccccaacgcaggaaatcgcg
tctttcgttgtgccgagttttcacaagcgttgggtcaggtttgccatcactgtggaaggc
gacactgtcacgttgtatctagattgtgacgatacaccatatgacaaacaaacatttaca
aggaatgtaggagctctcacgttttcagggcaggatacgattaggttgggcaattctgga
tcaggagcggcatttccagccaagtatatcggtggcattcaagaactgaagatctcatcc
aacccttctgatgcagtcatttactgtgaagtcgctaacctaaatgatgaagagtcttca
ggcgaagagtcgggatcaggggacgatgaggattcagtccctgaggaaaccacagatttt
ctcataacagcaacacagcaagcatatacatctcaatggcagatatctggcagcggggat
gacatggatattgaacccaccgagatggtggaactcaaaccagtcattggtccaccaggt
ataccgggattaccaggtgaaccgggattaccgggagagaagggcgagaagggggacacc
ggagaaaggggagacaagggtgaagccggtcagccggcacccgagggccaaaagggagag
aaaggagaacaaggtacaccaggtgtgtcaccgccggttataaaaccacagaaaggtgag
caaggagagcctggattgcccggtccggaaggcagggaaggtttgccaggagtagcagga
ccaccgggacctaaaggagagtcaggtgcaaagggagaaccaggagatcaaggtacagcc
ggagccaaaggagaccagggaccacctggtgttggcattcctggtcctccaggcccgcct
ggtgaaactgcatctgaacctgatgaggaaggattcttgagtgtgcctgggccaaaggga
gagaagggagaaagtggagcagcaggcaaaccaggtcccactggtaaacctggcattgaa
ggaccacctggtatacaaggtcccaagggagacaagggagacactggcattggaagacct
ggacagcccggcccacctggtccaccaggaccacctggagaagatgaggaggagggctct
ggcgatggatcattctttccaggtccagagggtccagaaggagctgaaggaccgattgga
cgaccaggaccacctggtgtacaaggtgtaccaggacctgctggcgaacctggccaagct
ggcccacctggaccagctggtgctgccggaattccaggattcccaggcccaccaggaagt
cgtggaaggcccggagaacagggtttgcctggtcccaaaggcgaacagggagtacccggc
aaagatgcggaaatagtgactgtggttggtccaccgggacctgctggaagaaatggtact
gatggagcccaaggtttaccaggacaacagggtgcagctggtactcctggcgtctctgga
ccccctggtattcaaggtccagttggtccaaaaggtgaaaggggtttgggtggaagccca
ggatttgaaggtgaaccaggtgccaagggagagccaggagcagatggcgtgccaggccaa
cctggctttgcaggtgaaccaggactgccaggagccattggccccatcggaccagcaggc
ccagtaggaccagcaggaccaccagggccaccgggtccgccaggaccatctgtgtctgtg
ccagttgaggaggaagaaggcagtggggatggttcattcttgaaggacaagaaaggtgat
acaggattgcccggggttcctggagcacctggtgctcctggagcacctggacctattgga
ttaacaggaccacctggaccagaaggaccacctggacagcagggaccacatggttttaat
ggaacacaaggtgaaaggggtttccaaggagcccagggaccacagggattcaagggtgac
aaaggagaacagggacccactggagagcagggcattggtatcagaggcttgcctggtttg
cctggagtaccggggttaaagggagaggatggtgtatgcttaccagctcagtgcacttct
cccatcattgatccacctggcgctctgccgcctggaccccccggcccacctggaccgcca
gggccaatcggaataccagggagaccaggggtaccaggaattcctggttttaatggaaca
gctaatggacttgttggtcagaagggtgaacctggtgaagtgggtacaatcggacttcca
gggttgactggcccaagaggatttcccggaaagcctggaagacagggtctgaaaggggtt
cccggcagtgacggtgcacctggacagccaggagtgcaaggaccagaaggacccaggggt
gagaaaggtgagccgtacacgataaaagacaatgaattcttgttactgaaaggtgacaaa
ggaaagcgagggagagctggtccaccaggcagcaagggtgaatttggccttccaggaaga
ccgggaagacctggaatacctggccttccaggtccagccggcaagcaaggagaaagagga
gagcctggttttgctggcataccaggattgagtggtttgaaaggagagaaaggagaaact
ggcgaagcagttgctatcaagggtgaaaaaggtgactcaggaccaatcggtttacctggt
cttccaggaccacctggaatgggaccagtcacagaagatcccagtgatccggcatctgtg
ccacgtcgttacaacggccaggatggtacaccgggcttaccaggtttgcccggaccaacc
gggccaaaaggtcagaagggagatatcggcgagagaggcgctctgggaccaataggtctg
ccagggaatccaggaacggatggtgaacaaggcgagaagggaatgcctggtcagactggt
gcaccaggtgaagcaggccctcggggtaccggaggtctgcctggtgccatgggaccccag
ggacccaacggtgtggatggtctgccaggacctgaaggtaaaaaaggaaagaagggagac
acaggagagccgggtcaacccggacaaaagggtgagccaggaccaccaggtgtcggtggt
ggtacaggtggtagtccagtacaaggtccagcaggcccaccaggaccaccgggaccacca
ggttcaccaggccaggatggtgacgcacaacatggcattccaggagctccaggccaacca
ggtccacagggaccaccgggtgtaggacaaccaggtattccaggaccaccgggtgtacct
ggtattggcattcctggaagtaatggtgagaaaggaatgcggggtccatctggtcagaga
ggtgtacctggtccacctggcccacctggtccatctggagggtctgaagatggagtacct
gtcggcaaatacactacagtagcaacttacttaacgcaagatgatatgcaagctgtcgca
agaatgacaccagttggaggtttggcattcatccatgatcgtcaggaactctacgtcagg
gttgaggaaggctggcagattatcgagcttggtcccatcttaccgctgccacctattccc
gtcactgctgtcccaggacccccatcttcaacaccaccaacaccaaccacaggaatcgta
gatggtactaatacgcttcacctgtttgctctcaatcatcctgtctctggttcaagccta
ggggacagcagtatgcgtggcctccgtggggctgacttcttgtgtttcaggcaagcacag
gaggccggtttacaaggcacttaccgcgctttcctctcgtctaaagttcaggatgtgaaa
tctgtagttaggagggaggacagagatacaccagttgtcaatgccaaaaatgaattactg
tttacaagctggaatagcatatttgaaggagaaggaggattcaatgataaagttcacatt
tactcttttgatggcaaagatgtgatggtggatcctacatggcctcaaaaaatggtgtgg
catggttcctcagccagtggaaacagaatgacggacagttactgtgatcagtggcttaca
gacaaaaccgacgatgtcgggcaggcaagctcacttcaaagccataaacttctcggacaa
gaacagtacgcttgcaataatgacttcattctactctgtatacagaacacagttggaaaa
gtgaaacgaaagtag
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integrated database retrieval system
