Ptychodera flava: 139149989
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Entry
139149989 CDS
T10724
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin-like
KO
K06100
symplekin
Organism
pfll Ptychodera flava
Pathway
pfll03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139149989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfll03021
]
139149989
03019 Messenger RNA biogenesis [BR:
pfll03019
]
139149989
Transcription machinery [BR:
pfll03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139149989
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
139149989
U7-dependent histone pre-mRNA processing factors
139149989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
139149989
NCBI-ProteinID:
XP_070578226
LinkDB
All DBs
Position
14:complement(27598927..27614022)
Genome browser
AA seq
1204 aa
AA seq
DB search
MAADSRRSIASQFFLEEGEDSVQQNTKMETMADKVVDLLNQAHLLTKDAQKINNLKQVQE
LIVNRDPALLDSFLDEMLQFQHDKSADVKKFVVGFIEEACKKDNELLSNVVVHLNMMLSD
VTQNVAVVKKVILCNTQLYKVALKWICKSKTIREEMESTWDVMTEMKNKIKAMLESENDG
IRTHVIKFLEMLIIVLSGRTSDSDVPKKSEGDVSLDQMPQNHPILRYDDLKMEGQLTFEN
LMKFMASPSITSVNLMATMGTMTTVGKQRPSFIGKVVQAFETLHVNLPPTLAKSQVSSVR
KNLKVQLLSLLRHPASVEYRAQITTLLSDLGATQQEISKNLAKPSESNKRSRTEEDVGPS
TSKKAKVIDDTAEPSTSPQVSKPVSTTSNIDLMAEEIQPLLHIENVANIVLLSMVALPDT
MPVHFQATYTPVESAGTGQQINHLSRMMATQFVAAGFQPSARQPDSDDASNSAKDSETAQ
GIQTVVGGHTVKKDEGGKKKSAQAMIPMVTTQKGVRRIKMFKLAEVTKPMTEVQNKTMII
SAMRRILQAEKHAIQGGVSDIRTKVIVCLVTQFHDELANLLKDFIFEDLRNRSELAFSWL
YQEYTKYQGYMPRTKEPTIEPYDKCLTELLSGVKERDNREGLFSNLVLQAPLLTPKALEI
VKEYCEDEAHVYIGMSTLRDLVLKRPADQYNYLLVLLDLTFHEKSEVRTQAVQFAKRLYE
RPNLRETIEVFALDCLKNLLHEKPTQKVMNKCPVLMSDNPENTWLEEIIKMCLTLYLALL
PMNHRLIHELASVYVATSALIKRTVLRVLENPVRGMGMGSPELLLLVENCPKGAETLITR
MLHILTDKAPPSPELVKRVRDLYHKRVSDVRFLIPLLIGLEKKEVIAALPKLIKLNPIVV
KEVFHRLLMSHQGDNSAGQSPLSPAELLIALHNIDSSKCDMKSIIKATSLCFNEKTIYTQ
EVLAVVMQQLMEQNPIPTLLMRTVIQSLSMYPRLIGFVMNILQRLIIKQVWKQKKIWEGF
VKCCQRTKPQTFQVLLQLPPQQLKNVFEMSPDLREPLLEHVKSFTPHQRAHIPKSVMQVL
ETEEKQESKPAESTESKTSEEAKTKQAQQLVQEKLYQQKLAEERVKQQKLLQERLAKERK
LKEEEEEKQKKAESKPEASSDVPTVAENEDKVKEESAEAMETSETEQKTDTEEGSQLKEE
PMES
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgatagtcggcgatctattgcatcccagttcttcctcgaagaaggggaagac
tcggtgcagcagaacactaagatggaaacaatggctgacaaggtggtagacttgctaaat
caggcccatttgctgactaaagatgctcagaaaataaacaatctgaagcaagtgcaagaa
ctgatcgtcaacagagacccagcattactggatagttttctggacgaaatgttacagttc
caacatgataaatcagctgatgtgaagaaatttgttgttggtttcatcgaagaagcttgt
aaaaaagacaacgaactgttgagtaacgttgtggtacatctgaatatgatgttgagtgat
gtcactcaaaacgtggcggttgttaagaaagtgattctctgtaacactcagctgtacaaa
gtagccctcaagtggatttgcaagtccaagacaattagagaagaaatggaatcaacatgg
gatgtcatgacagaaatgaaaaataaaatcaaagctatgttagagtcagagaacgatggt
atacgaacgcatgtgatcaagttcttagaaatgctgatcatagttctgtcaggcagaaca
tctgactctgacgttcctaaaaaatcagaaggagacgtttctctggaccagatgcctcag
aatcatccaatactcagatatgatgacttgaaaatggaaggacagcttacatttgagaat
ttgatgaagttcatggcatccccaagcattaccagtgtcaacttaatggctacaatgggt
accatgacaactgttggtaaacaacgaccttcattcattggaaaagttgtccaagcattt
gaaactttgcatgtcaatctaccacccaccctggccaagtcacaggtcagcagtgtcagg
aaaaatctcaaggtgcagctgttaagtctgttgagacaccctgcatctgtggagtaccgg
gcacagattacaacattactcagtgatttaggggcaacacaacaagaaatttcaaagaac
ctagccaaaccatcggagtcaaacaagagatcccgtacagaggaagatgttggaccgtct
acttcaaagaaagccaaggtaatagatgacactgccgaaccgtctacatctccacaagtc
agcaaaccagtatcaacaacatccaacatagatctcatggctgaagagatacaacctctt
cttcacattgaaaacgttgctaacatcgtcttgctgagcatggttgctcttccggatacc
atgcctgtacactttcaagccacctacacgcctgtggaatcagccggaacaggccaacag
attaatcatctttcaagaatgatggctacacagtttgttgcagcagggttccaaccgtca
gctagacagcctgattcagacgatgcctcaaattctgccaaagattcagagacagcccag
ggtatacagacagtggttggtggacacactgtaaaaaaggatgagggtggtaaaaagaaa
tctgcacaagccatgattcccatggtaacgacccagaagggagtgcgacgtatcaaaatg
ttcaagttagccgaggttacaaaaccaatgacagaagtacagaacaaaaccatgattatc
agcgctatgagaagaattctacaagctgaaaagcatgcaattcaaggtggtgtaagtgac
atcagaaccaaagtcattgtttgccttgttactcagtttcatgacgagttagcaaactta
ttgaaagacttcatctttgaggatctgaggaatagatcagaactggcgttttcatggctg
taccaggaatacaccaaatatcaaggctacatgcccaggacaaaggaacccaccattgaa
ccgtacgacaaatgtttgacagagctgctgtctggtgtcaaagaaagggacaacagagaa
ggattgttttcaaatctagtgctgcaagcaccattgctcacaccaaaagcattagaaata
gtgaaggaatattgtgaagatgaggcccatgtgtacatcggtatgtcaactctcagagac
ttggtgttgaaacgaccagcagatcagtacaactatctcctggtcctgctggatcttaca
ttccatgaaaagtctgaagtgagaactcaagccgtccagtttgcaaagagactgtatgaa
cgtccaaacctgagagagactattgaggtctttgccttggactgtctgaagaacttactt
catgagaagccaacccagaaagtgatgaataagtgtcccgtcctgatgagtgacaatcca
gagaatacttggctggaagaaatcatcaagatgtgtctgacattgtatctagctctactg
ccaatgaaccatagacttatacatgaactggcatcagtgtatgtagcaacctcagctttg
atcaagagaactgttctcagagttctggaaaatcctgtaagagggatgggtatgggttca
ccagagctgctcttgctggttgaaaactgtccaaaaggtgctgaaaccctcattacaaga
atgttgcacattctcacagacaaagcacctccttcaccggagttagtcaagagagttcgt
gatctgtatcataaacgtgtttcagatgtcaggtttctcatcccattgctcattggactt
gaaaagaaagaagttatcgccgcgttgcctaaactaatcaagctgaatcccattgttgtg
aaggaagtgttccatcgtctattgatgagtcatcaaggtgacaacagtgctgggcagagt
ccgctgtcaccggctgagttgctgatagctctgcataacattgattcatccaaatgtgac
atgaagtccatcatcaaagcaaccagtttgtgtttcaatgagaaaactatctacactcag
gaagtacttgctgtggtgatgcagcaattgatggaacagaacccaatcccaaccctgctg
atgagaacggtcatccagtctctcagcatgtatcctaggctcattggttttgtcatgaat
atccttcaacgactgattatcaaacaggtgtggaaacagaagaagatatgggaaggattt
gtaaaatgctgccagagaacaaaaccgcagactttccaggtactactacagctgccaccc
cagcaattgaagaatgtctttgagatgagccctgacttaagagaaccgttactggaacat
gtcaagtcattcacaccacaccagagagcgcacattccaaagtccgtcatgcaggtgtta
gagacagaagaaaaacaagaaagcaaaccagctgagagcacagagtccaagaccagtgag
gaagccaagacgaagcaagcacagcaactggtacaggagaaattgtaccagcagaaactt
gccgaggagagggttaaacagcagaagctgctccaagagagacttgccaaagagaggaaa
ctgaaagaggaggaggaagagaagcagaagaaagcagagagcaaacctgaagcatcatct
gatgtccctactgttgctgagaatgaggataaagtcaaggaagaatctgcagaagccatg
gaaaccagtgagacggaacaaaagaccgatacagaagagggttctcaattaaaagaagaa
ccaatggaaagttaa
DBGET
integrated database retrieval system
