KEGG   Ptychodera flava: 139150064
Entry
139150064         CDS       T10724                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9-like
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
pfll  Ptychodera flava
Pathway
pfll03020  RNA polymerase
pfll03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pfll00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    139150064
  09124 Replication and repair
   03420 Nucleotide excision repair
    139150064
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfll03021]
    139150064
   03400 DNA repair and recombination proteins [BR:pfll03400]
    139150064
Transcription machinery [BR:pfll03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     139150064
DNA repair and recombination proteins [BR:pfll03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      139150064
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Zn_ribbon_recom Lar_restr_allev bHLH_ILI Zn_ribbon_IS1595 DUF3716 SR1P DUF7838 DZR Ogr_Delta
Other DBs
NCBI-GeneID: 139150064
NCBI-ProteinID: XP_070578318
LinkDB
Position
14:28866306..28870072
AA seq 128 aa
MDFGIEKPSAGPGFVGIKFCQECNNMLYPKEDKESKVLLYACRNCDYQQEADNTCIYVNK
IQHEVDELTQIVADVIADPTLPRTEDHPCPRCGQREAVFFQSQSARAEEGMRLYYVCAAP
NCTHRWTE
NT seq 387 nt   +upstreamnt  +downstreamnt
atggattttggtatcgaaaaaccaagcgctgggcccgggtttgttggcatcaaattctgt
caagagtgcaataatatgttgtatcctaaagaagacaaagaaagtaaggtgctgctctat
gcgtgtcggaactgtgactaccaacaggaagctgataacacttgtatatatgtcaacaaa
atccagcatgaagttgatgaattaactcagatagttgctgatgtgatcgcagacccaacc
ttgccgaggacagaagaccatccgtgtccgagatgtggacagagagaagccgtgttcttc
caatcacagtcggctagggcagaggagggaatgagactgtactatgtgtgtgcagcacca
aactgtacacatcgatggacagaatga

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