Ptychodera flava: 139150204
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Entry
139150204 CDS
T10724
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear exosome regulator NRDE2-like
KO
K26109
nuclear exosome regulator NRDE2
Organism
pfll Ptychodera flava
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfll03019
]
139150204
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
139150204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
TPR_14
HAT_Syf1_CNRKL1_N
TPR_12
Motif
Other DBs
NCBI-GeneID:
139150204
NCBI-ProteinID:
XP_070578524
LinkDB
All DBs
Position
14:32426167..32439417
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AA seq
1330 aa
AA seq
DB search
MADDVNTESTIVGPPATKQLFPIKEDVPQRAATPTLFPSVASATVEEREGQSANFDWLCN
TSFKPENAIAIAQIHQEKITLDGEEDDSLQTQSVTFAEDKSKVAEECKDKLKQSRHSSDE
ADEKRHHEATVRKSKSHRKRHSDSDKYSDDDRKKRKSKHDKHHRKKDRHHSPDPYSSDDG
RGRTKHRSKYKKSSHKHKKHSHHKESRRDVSKPSRESKALPLKPSTIWLDETNLTLEDAF
REDRKSDRNNLAFKTLYHLHVARYRRLGKLCLGQQSEQVIDWTDDKEEKKSKKKFGKGRY
YGKEAIKSLLNDESTVIELSAPKLESKRGGHARSTDMPYLPLEISVAEVTAVPLRDSDGR
LKCVDPLGIHDAATQSYLQGKGKDESKTVNLAKLTEDKEVESKNEYLKKRTAEFSKKTLE
NPNDIKAWLELVKFQDEVVRRGVFGMDETPEGERKKKTDLAVAEKKIAILEKAVEKNPNS
IELKIEHLELCKECWTSAKIHEHWQQMAFQHPNDPLLWQQYLMFSQSSFSSFTFNKIIKL
YGKCLSTLSSIVEGTFQSHKPLPYTEQYMLDLFVQQCEVLRQAGYAEKSIAAFQAMIEFN
CFCPPQLEETTKASAQVAFFETFWDSEEPKFGEKDAKGWNKWMHKKEKGGWEQVALQEQQ
DDEEQSDGEDELIKVDDPTWKVWHRLENKREQQHWLPWKPDGKKGETEDDCEDPDRLVLF
DDFSSSLFKLETQEMKFHLLLRFLQFLGIPTDPAYSSSCYQTHQHFLVGVEHPSQVLQQS
MCPSGTGWRVKCQGVSHGIQSLHERKLLSGKNSGLFSSAEFNEFISRVFGQAVALLSGEA
RTHLTLTWLQYESGKTVHSGKKSKHQVKAVRKCAKSLLKEAHNRNNLLLWETYAMFEWTT
DNIKEARKVFDMALTLYSQFGKDSQSPSMRRAAARLCHRYAELELGFDIVDRRAMGNSKD
KVLTRVFLIQAETEPCIVSRFGEGGAYVPADGSKAVNPVSLLKARSAYQQEFQKTIESYE
DQVTSMSSVQEPYGSYVVHFIICYAIFQYLTVSLQAASVVFEEGMSIMRNLCKLPQTPED
RFNRFGEHFLLDYEMLLASYVRLNVFHMMHQPTALAPIRNLLQRALSEFPDSPAFMDFFI
MLEMRSHITGRVRRYFNHATLETNTPLPWFYAVYAEELRQQTIEECMGDRVNDAHDKDMA
WQLPSTGITHRIRSLFERATANRTVRYSVLLWRMYIQFEVLYGNAERGKPIFYKALQHCP
WSKAIYMDAVQYFPEDFQQIVDLMMEKEIRVRAPVEEVELLMQAKQQESDVEAVQCDHVE
GDSITLNPLT
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacgtaaacaccgagtcgacgatagtcggtccgccggcgactaagcaactg
tttcctatcaaagaagacgttccacaacgtgcagcaacaccgaccctgtttccctcagtt
gcttcagccactgttgaggaaagagaaggacaatctgctaactttgattggctttgtaat
accagcttcaaacctgaaaacgccattgccattgcgcagatacaccaagagaaaattacc
ctagatggagaagaggatgatagcttgcagacacagtcagttacttttgcagaggacaag
agtaaagttgcagaggaatgcaaggataaactgaaacaaagtagacattcaagtgacgag
gctgatgaaaagcgccaccacgaggccacagtcaggaaatcaaaaagccacagaaagaga
cattcagactcagacaagtattcagatgatgataggaaaaagagaaaatcaaaacatgat
aaacatcacaggaagaaagacagacaccactctccagacccatacagtagtgatgatggc
agaggtagaaccaagcatagatctaagtacaagaaatcatcacacaaacacaagaaacat
agccatcacaaggagtcaaggagagatgtctctaaaccatccagggagagtaaagcattg
ccactgaagccatccaccatctggcttgatgagacaaacctcacactggaagatgccttt
agggaagacaggaagagtgataggaacaacctggctttcaaaaccttgtatcatcttcat
gtggctcgatatcgcagacttgggaagttgtgtcttggtcaacagagcgaacaggtcatt
gactggacagatgataaggaagaaaaaaagagtaaaaagaagttcggaaaggggagatat
tacggcaaagaggccatcaaaagcctcttgaatgatgaatctacagtcattgaattatct
gctcctaaacttgaaagtaagcggggcgggcatgcaagaagtactgatatgccgtacctg
ccattagaaatctcagtggctgaagttactgctgtaccgctgagagacagcgatggtaga
ttgaaatgtgttgatccgctgggaattcatgatgcagcaacccagagctacctgcaaggc
aaaggcaaggatgagagtaagacagtcaacttggcaaaattgaccgaggataaggaagtt
gaatctaagaatgaatacctgaaaaagaggactgctgaattcagtaaaaagacccttgaa
aatccaaatgacatcaaagcatggcttgagcttgtcaaattccaggatgaggttgtcagg
agaggggtcttcgggatggatgaaacaccggaaggtgagagaaagaaaaaaacggatctt
gctgttgctgagaagaagatagctatactagagaaagcagtggagaaaaaccccaattcc
attgaattgaaaatagaacatttagaactgtgtaaagaatgttggacatccgcaaagatc
catgaacattggcagcagatggccttccagcatcccaacgatccattgctatggcaacaa
tatttgatgttctctcagtctagtttctcaagtttcacttttaataagatcattaaactg
tatggcaaatgtctgagtacattgtcttccattgttgaagggacatttcaatcccataag
cctttgccatatacagagcaatatatgctagacctatttgtacagcagtgtgaagtcctc
agacaggctggatatgctgagaagtcaatcgctgcatttcaagccatgatagaattcaac
tgtttctgtccaccacagttggaagaaactacaaaagctagtgcacaggtagctttcttt
gagaccttctgggacagtgaagaacccaaatttggtgagaaagatgccaagggttggaat
aaatggatgcataagaaagaaaaaggaggatgggagcaagttgctctccaggaacagcaa
gatgatgaggaacaaagtgatggagaagatgaactgatcaaggtcgatgacccaacatgg
aaagtatggcacagattggaaaacaaaagagaacagcaacactggttgccatggaaacct
gacggcaagaagggagagacagaagatgactgtgaggatcccgatagacttgtcctattt
gatgatttcagttcatcgctattcaaacttgaaactcaagaaatgaaatttcacctgtta
ctgagattccttcagtttcttggcattccgaccgacccagcttattccagcagctgttat
cagactcaccaacatttccttgtaggtgtggaacacccatcacaggtactgcagcaatcg
atgtgtccgtctggaacaggctggagggtcaagtgtcagggggtcagccatggaatccag
tccttgcatgagaggaaactgttgtcagggaaaaactctggtcttttctcgtctgccgaa
tttaacgagtttatcagcagggtgtttggccaggcagttgcgttgctgtcaggggaagct
agaacacatctgactctcacttggctccagtatgaatctggcaagacagttcacagtggt
aagaaatcaaaacaccaggtgaaggctgtcagaaagtgtgccaagtctctgctgaaggaa
gcacacaaccgaaataacctgctgttgtgggagacatacgccatgtttgaatggacaact
gataatatcaaggaggcaaggaaagtgtttgacatggccctcactctgtacagccagttc
ggcaaagattcacaaagtcccagcatgagacgggccgctgccaggctgtgtcacaggtat
gctgaacttgaacttggatttgatattgtggatagaagggcaatgggtaactccaaagac
aaagtattaaccagggtgtttctgattcaagcagaaacagagccctgcatagtgagtaga
tttggagaaggtggtgcctatgtgccagccgatggcagtaaagcagttaacccagttagc
ttgttgaaagcacggagtgcataccaacaggaatttcagaaaacgatagagagctacgaa
gatcaggtaacatccatgtcttctgtacaagaaccctatggcagctacgttgtccacttt
atcatctgctatgcaatattccagtacttgacagtgagtctacaagcagcgtctgttgtc
tttgaggagggaatgtccatcatgagaaatctatgcaaactgcctcaaaccccagaagac
agattcaacaggtttggggaacatttcttgctggactatgaaatgctgctggcttcatat
gtcaggttaaatgtcttccacatgatgcaccagcccacagcgcttgcacccatcaggaat
ctcctccagagggcgctgtctgagtttccagacagccctgccttcatggatttcttcatc
atgctggagatgaggtcgcacatcactggcagggtgaggagatacttcaaccatgccacg
ctggagacaaatactccactgccatggttttatgcagtgtatgctgaagaactgaggcaa
caaacaattgaggaatgtatgggtgatagagtgaatgatgcacatgataaagacatggca
tggcaacttccatctactggaatcacccatcggataagatccctttttgagagagctaca
gccaatcgtacagtcagatacagtgtgctactctggagaatgtacatacaatttgaggtg
ctatatgggaatgctgagagaggaaaacccatcttttacaaagccttgcaacactgcccc
tggtctaaagcaatttacatggatgctgtccagtattttccagaggacttccagcagatt
gtggacttgatgatggagaaggaaatccgagtgcgggctccggtggaggaagttgaactc
ttgatgcaagcaaaacaacaggaatcggatgtagaagcagtgcaatgtgatcatgtagag
ggtgatagcattaccttgaaccccctgacttaa
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