Ptychodera flava: 139151345
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Entry
139151345 CDS
T10724
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
pfll Ptychodera flava
Brite
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
139151345
3'-5' decay
Other 3'-5' decay factors
139151345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139151345
NCBI-ProteinID:
XP_070580150
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Position
15:complement(16571013..16594551)
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AA seq
1870 aa
AA seq
DB search
MDSKHKELADKANDQYQKQQYKEAAKTYSEALETLAPRNNNSSTNTRSNVNGSNSQTSTV
ETQISYLSSRATCYLKLKQYEKLVEDCNSILALSDNKNNKALSRKTVALSKLGKYSDAYN
VAKLWSNLEPENTQALKELNRLKKIVDALQEEGADEEDLNSSLDDVEARTPLESSDQSVR
KTSTKGSTTSPPHQASSTSSSSSVHKKRGSKQQKSKCTDSSLYCSYCNVQCSTQVDLHLH
CTSESHQSIIMSDDGRDWKHRPPPRGVTREEYMLCSRFPKCRFGDQCTLAHSDEELSEWR
ERYKYRQMKMQRAREKKLHGISYSEQILERWMNSPTPLNVLTESLDDVKITVNSDYNVTV
SSKKSSHVWTYTLHCKAPRQLCRVALLYDIHRSHFCISNISFGDSKRQTQQEVGPNCQEW
VQLKNNNNNNIKSSERLYRVKLAFTSEIFGTFRQSIVFDFGSEPVLMKRVCVDAVSPSDL
KQIDEAMDTIICTTERWDRSNKTIISYDPPLRDSTDKDKGLLSFYTQPTPSEKLVNLALL
QKNMTKNNYRSRLHDLLNIEEMAQFKHMSKYNVKTTLQLVSSFLLLPGKMQGAKYAVDGE
MFAQMRLNDDLSDQTPGGRLILNSSSTVLLSSGSNKTNDTVYEAAVEEKGKGFIFLRLSK
RCVDELRLRKDTEWKAEVQFQLNRLPVCEMHYAVDKVPDLDIVFPDTQVPPNIPWAPHRQ
WSEKLDPRLNAKQKEAVIAMTTPLDIKVPPILVIGPFGTGKTFTIAQATKLILQQPNTRI
LICTHSNSAADLYIKDYLHSYVEAGHSEAKPLRIYFKDRWVRTVNREVQPYCLIKDGFFY
MPTKEDVLKHRVVVATLSTSRYLSHLDLEPGFFTHIFLDEAAQAMECETIMPLALASEHT
RIVLAGDHMQLSPEVYSEFARERNLHVSLLERLFEYYPQEHSCKIMLCENYRSHEAIVDY
TSRLFYEGRLLASGKQPQHTSFYPLTFFTARGEDVQDKNSTSFYNNAEVFEVVERVDELQ
KMWPTEWGTLDVSNIGVVSPYADQVFRIRSELRKRRLFGVDVERVLNVQGKQFRVLFIST
VRTRNTCKQQRRRKPSRGQNQGAESLEDDEVNYGFLSDAKLLNTAITRAQSLVAVVGDPI
SLCSVGKCRKLWEQFIKICHENKSLYGITYSSIRSQLDGVELKKTYTLNPLAPEFIPRAL
RAQMVGMPFIQGSGAVTTGAGSLIDGSRAHAYQAGQAQGVTGTSIAGARPYGAFLPKAGG
NIVRPASPVHRIDPHTGMSYVYMPSMYNPGIYMPVPLRVLPNGQLMQPYIDPGYAYPQRI
QQYGMNYLMMHQMSPTGISVGAQTPPPTQQQQQQQQQQSQQQFQQQQQQTDKSQGNKDAE
KQNQEGQAVAGRGVAKDGKHATQNAAESKDEVLAKMKERQLQEEYKYLVRTRGLEYANRF
MATQKAQSANQMAREQARIEQQQQQQQQQHLIHPLQTKLLQEHLQKGQMGFDQQNFYVQQ
WLEQQQQQVLAANKALSGQGQSQGQGSAGGHIAAAGTSHVGRQQDTQAIQRAMGNMQNYT
NQSAAGVGVSGSNQQQQHGASGSSQQISVMQQQGQASRAVDLAMLERMQRIKAAAAATGN
MPNMAHREQLQQTPQKGGERWGGANVGAPAEDGEWNQLNSWNDSSFHWPSLQSSGGDMRQ
QRQPTSMGTADAKSPLMGMSSATGRNTPLYERQSERNSPAYRMWQQQQQQQMHQQEQHQH
QQQFQQGTAAESYQQNLMQNRLYNQPLSPMSQPMGNNPASIMGVPSTPPHPQDNSPTNSA
SQQQQQQGQLSKQDIKTPAGMSYASALRAPPKPKPKPVAEERKTASPDPLSLIKDLNIRS
NSDGYYSYFN
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atggatagcaagcacaaggagctcgctgacaaagctaatgaccagtaccagaaacaacaa
tacaaagaagcagcaaagacatattctgaagcactggagactcttgccccaagaaataac
aacagtagtactaataccagatcaaatgtaaatggtagtaactcccaaactagcaccgta
gagacacagatatcttacctttctagtagagccacgtgttatcttaaattgaaacaatat
gaaaaattagtagaagactgtaattcaatactggcattatcagacaacaaaaacaacaaa
gcactctcccgaaaaactgtagcactgagtaaattaggcaaatacagcgatgcatataat
gtagcaaaactatggtcaaatttagaaccagagaatacgcaagctttaaaggagctaaac
aggcttaagaagattgtcgatgctttgcaggaagagggtgctgatgaggaagacctaaat
agcagtttagacgatgttgaagctcgaacaccacttgaaagctcagaccaatcggttcgt
aaaacatccaccaagggcagcacaacatctccgccacaccaagctagtagtaccagcagt
agtagtagtgtacataaaaagaggggtagtaaacaacaaaagtccaagtgtacagattct
tcactgtattgctcctactgtaacgtgcaatgttcaacgcaggtggatcttcaccttcac
tgtaccagcgaaagccatcagtccatcatcatgtcagacgatggacgagactggaaacac
cgtccgccgcccagaggagtaactcgtgaagaatatatgctttgtagtcggtttcccaaa
tgtaggtttggtgatcagtgcacgctagcacattcagatgaagaactgtcggaatggagg
gagaggtataagtacagacaaatgaagatgcaaagagcaagagaaaagaaactgcacggg
ataagttattcagagcagattcttgagagatggatgaattctccgactcctttgaatgtg
ctgacagaatcactggatgatgtaaaaatcactgtaaattcagattacaatgtcacggtt
agctccaagaagtcttctcatgtttggacctacactctccactgcaaggcacccaggcaa
ctatgtagagtagctcttttgtatgatattcaccgctctcatttctgtatatctaacata
tcatttggtgacagtaaacgacagactcaacaagaagtaggtcccaattgccaggagtgg
gtacagctaaaaaacaataacaacaacaacatcaagagctcagaacgcctgtatcgcgtg
aagctggccttcacgtctgagatatttggcacgtttcgacagtctatcgtctttgatttt
ggctctgagccagtgcttatgaagagggtgtgtgtggatgcggtgtcaccgtcggacttg
aagcaaatcgacgaggccatggacacgatcatctgcactaccgaaaggtgggaccgaagc
aataaaaccatcataagttatgatccgccgttgagggactccacggacaaggacaagggc
ttgctatctttttacacacagccgacgccctcagagaaactcgtcaatctggcacttctg
caaaagaacatgacaaaaaacaactacaggtctcgccttcatgacttactcaacattgaa
gaaatggctcagtttaaacacatgagcaaatacaacgtgaagacaacactacaactggta
tccagctttctgctcctgccagggaaaatgcaaggtgctaagtacgcggtggacggagaa
atgtttgcccagatgagactgaacgacgacttgtcagatcagacccccggtggcaggctg
atcctgaacagcagttctacagtgttgttatcgagtgggtcaaacaaaaccaacgacacc
gtgtacgaagcagctgtggaagagaaaggaaaggggttcatctttctcaggctgtccaag
agatgtgtggatgagctcagactcaggaaagacacagagtggaaagcggaagttcagttc
caactcaacagacttcctgtgtgtgagatgcactatgctgtcgacaaagtacccgatctt
gatatagtattccctgacacccaggtaccaccaaacattccatgggctcctcacagacag
tggagtgagaagcttgacccaaggttgaatgccaagcagaaagaggcagtgatagcaatg
accacaccattagacatcaaagtcccacctatcctagttatcggtccatttggtactggc
aagacatttactatagctcaggcaactaaacttatcttacaacaacccaatacaaggata
ctcatttgtacacattctaatagtgctgcagatttgtatataaaagattacctacattcc
tacgtagaggcaggtcatagtgaggctaaaccacttcgtatctacttcaaggatcggtgg
gtcagaaccgtcaaccgagaggtccaaccctactgtctcatcaaagacggtttcttctac
atgccaacgaaagaagacgtcttgaaacaccgtgttgtcgtagcaactctcagtacatct
cgttatctcagtcatttagatttagagccaggtttcttcacacatatattccttgatgaa
gcagctcaagctatggagtgtgaaacaatcatgcccttagcattagcatcagaacatacc
agaatagtactagcaggagaccatatgcagttgagcccagaggtatattcagagtttgcg
cgggaacgcaaccttcacgtgtccttactagagagattatttgaatactatcctcaagaa
cattcctgcaagataatgctgtgtgagaactaccgttcccatgaagccatcgtagactac
acttccaggctgttctatgagggccgactactagccagtggtaaacagccacagcacacc
agtttctatccattgactttctttactgccagaggagaggatgtgcaagacaagaatagc
acatcattttacaataacgctgaggtttttgaagttgtagaaagagtagatgagttacag
aagatgtggcctactgagtggggtacccttgatgtcagcaatataggtgtagtcagccca
tatgctgatcaagtgttccgcatcaggtcagagctgaggaaacggaggctctttggagtc
gacgtggagagagttttgaatgttcagggtaaacaattccgagtgctgttcatcagcacg
gtgcgcacgaggaacacatgcaaacagcagaggaggaggaaacccagcagggggcagaac
cagggcgctgagtctttggaagacgatgaagtgaactacggattcctctctgatgccaag
ctactcaacactgccattacaagggctcagtcactggtcgctgtcgttggggatcctata
tctctgtgttctgtgggcaagtgcagaaaattatgggaacagttcatcaaaatttgccac
gaaaacaagagtctgtatggcataacgtacagcagtatcaggtcacagttggatggtgtt
gagctgaagaagacatacacgctgaacccgctagcacctgaattcattcctagagcactg
agggcacaaatggtcggcatgccattcatccaaggctcaggggctgtcacaacaggtgct
ggcagcctcatagatggttcaagagctcatgcataccaggctggacaagcacagggtgta
acaggcacttccattgcaggggcaagaccgtatggtgcttttttgcccaaagccggtggt
aatatagtcagaccggctagtccagtgcatagaatagatccacacacaggcatgagttat
gtgtatatgccgagtatgtataatcctggaatctatatgcccgtcccactccgtgttctt
ccaaatggccaacttatgcagccttacattgatccagggtatgcgtatccgcagcgaatc
cagcagtatggaatgaattacctcatgatgcaccagatgtcaccaacggggatcagtgtg
ggtgctcagactccgccaccaacacaacaacaacaacaacaacaacagcagcagtcccag
cagcaattccagcaacaacagcagcagacggacaaatctcagggcaacaaagacgcagag
aaacagaaccaagaaggacaggctgtggctgggagaggggttgccaaagacggcaaacat
gccacacagaatgctgctgagagcaaagacgaagtgctagccaaaatgaaagagaggcag
ctgcaggaagagtacaaatatttggtccggacgaggggattggagtatgccaaccgcttc
atggcaacacagaaagcacagagtgccaatcaaatggcaagagaacaggccagaatagaa
caacagcagcaacaacagcaacagcagcatttaatacatccgctgcaaacaaaactcctt
caagagcatcttcagaaagggcaaatgggatttgatcagcagaatttctatgtacagcag
tggcttgagcagcagcagcagcaagtgctggctgcgaacaaggcactgagtggacagggt
cagagtcagggtcaagggtcagctggaggtcacatagcggcagcaggtacctcacatgtc
ggcagacagcaagatacccaagcaatacagagagccatgggtaacatgcagaattacacc
aaccagtccgccgctggtgttggggtctctgggagcaaccagcagcagcaacatggtgct
tcaggcagcagccaacaaatcagtgtcatgcagcaacagggacaagccagcagagcagtg
gacctagccatgcttgagagaatgcagcgcatcaaagcagccgcagctgcaacaggaaac
atgcccaacatggcgcatagagaacagctgcagcagacacctcagaaaggtggcgagagg
tggggtggtgctaatgtcggcgctccggcagaggatggcgaatggaatcaactcaacagc
tggaatgactcctcattccactggcccagcctgcagtctagcgggggtgacatgcgtcaa
cagcgtcagccaacaagtatgggaactgcagacgccaagtcacctctgatgggaatgtca
tccgcaacgggtcgcaataccccgctgtacgagaggcagagtgaaaggaactctccggcc
tacagaatgtggcagcagcagcaacaacagcagatgcaccaacaggaacagcatcagcat
cagcagcagttccagcaagggacagcggctgaaagctaccagcaaaacttgatgcagaac
aggctgtacaatcaaccgctgtcacccatgtcccagcccatgggcaataacccggccagc
atcatgggagtgccttccacaccgccgcatccgcaggataacagtcctaccaactcagca
agccagcagcagcaacaacagggtcagctatctaaacaagacatcaaaacaccagcaggt
atgtcctatgcaagtgcattgcgggcacctccaaaaccgaagccgaaacccgtggcagaa
gagcggaaaacggcttcaccggatccgctgtctctgatcaaagacctgaacatcagatca
aacagcgatggatactattcatacttcaactga
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