Ptychodera flava: 139151985
Help
Entry
139151985 CDS
T10724
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pfll Ptychodera flava
Pathway
pfll03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139151985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfll03019
]
139151985
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139151985
mRNA degradation factors
5'-3' decay
Decapping complex
139151985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
139151985
NCBI-ProteinID:
XP_070581162
LinkDB
All DBs
Position
2:5009833..5043391
Genome browser
AA seq
834 aa
AA seq
DB search
MSDSFFGFQSTLPSFEDDIAGDGLCDDLEGNYDALNDDTFGEGATSGNWESTHEQFAKEF
HGHSFEDEEEGKRDISSRSLDSGFHTSERPTSPNDDLFMEQSINKLVLDDDIDDPAIMVS
SKAKPINMPTGGSGLSRSLFSPSPPTLLDPVTLMSPKQNSIWSSPRAPSPDEKLKTLLNI
GKTSSALPPNLVDSAIVTAIGDKTPKAPRTPAYPFQGSADKMKSNTRHMSSPAQPMPNAM
TAEELEHSLRNRAPPPRTVSPIFGSPPSTALPIGTPPKPQFFQQAMHQQVQHQSPGQIPP
HVLHQMQQQLSRSGGRISPTQLNQMIQEGRASPLASHPLLSQHMSPGIPPPPHGSIFPRG
KVPPHLAVRCDSSGQGRVSPPMMMGQSPPQFHRAPGMGGDGPPMSPYNRQQYNPQRTPYR
NQDNRGYRQYDHRGRNNRNYNHSDRSNGSLHEYDNLMTQKEKDWIIKIQMMQLQSNNPYL
DDYYYQTFVLKKRALEKQNSGVESENKGSDPEIIMPQPKQTEARQYKPAHFEGTLGTVSV
ASVNNPRKMINVRTPSQQEDDQNVGSKDLTVRKRAHLLLGIEKIYTLLLELDDLEKKALA
LPEDDKDIEQERQKLVNQIFNSLSVPNKLQTGQDNYFLQILSINKGRRLIGRVLPVLSSN
QAASVVEALLYNINYFIKKDQQENNLLSVYLPLANIIRSSDLEKLVAFMTSFTSGANVVS
SVHHGTSPVSSAVQNKFGISILCLLLCQGEHILSTQSPLDINADTEGAWNELVLKVGQEL
SSVPVENIAIPTESGSNSTVLEHFGRYVDKRTFLFLQNCIKSSKSSLIISPKVN
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatagttttttcgggtttcaatccaccttgccgtcctttgaggacgacattgct
ggagatgggctatgtgatgatttagaaggcaactatgatgccctgaatgatgatacattt
ggtgaaggagcaacaagtggaaattgggagtccactcatgaacagtttgcaaaggaattc
catggacacagttttgaagatgaagaggaaggcaaacgtgatatcagttccagatcattg
gattctggtttccataccagtgaaagaccaacatcaccaaatgatgatttgttcatggaa
caaagtatcaataaactagtgcttgatgatgacattgatgatccagctatcatggtgtcc
tccaaagctaaacctatcaacatgcctacaggaggatctggtcttagtcggagtctgttc
agtccatcaccaccaacattattggatccagttactctgatgtcaccaaaacaaaacagc
atctggagctcaccaagagcgccctcaccagatgagaaactgaagacacttcttaacatt
ggaaaaacatcatcggccctaccaccaaatcttgttgattctgccatagtgacagccatt
ggtgataaaactcccaaagcacctcgtacaccagcctatcctttccaaggatcagctgac
aaaatgaagtcaaacactcgacatatgtctagtccagcccagccaatgccaaatgctatg
acagctgaagaacttgaacacagtttaagaaatcgagctccacctcctcgaactgtatcg
ccaatatttggatcacctcctagtacagctctgccgattggtacaccacctaaaccacag
ttctttcagcaagccatgcatcaacaagtacaacatcagagtcctggacaaattccaccc
catgttctacaccaaatgcagcaacaactatccaggtcaggcggtagaatttcaccaaca
caactcaaccaaatgatacaagagggtcgtgcatcaccattagcatctcatcctctacta
tctcaacacatgtcaccgggtattccaccacctcctcatggatcaatatttccaagagga
aaggttccgcctcacttagctgtcagatgcgactccagtggtcaaggtcgtgtttcacca
ccaatgatgatgggtcaaagtccaccacagtttcacagagcacctggaatgggtggagac
ggtccaccaatgtctccatacaacagacaacaatacaaccctcaaagaacaccataccgt
aaccaagacaacaggggatacagacagtatgatcaccgtgggagaaacaacagaaattac
aaccactctgatcgcagcaatggatcccttcatgaatatgataatttgatgacacagaag
gaaaaagactggattattaagattcagatgatgcaattacagagtaataatccatatctt
gatgattactactatcagacatttgttttgaagaagagggctctagaaaaacagaacagt
ggagttgaatcagaaaacaaaggcagcgatcctgagattatcatgccacaaccaaaacaa
acagaagcaagacaatacaaaccagctcactttgaaggaacattaggaactgtttcagtg
gctagtgttaacaatccaagaaagatgattaatgtaagaacaccatctcaacaggaagat
gatcagaatgttggcagcaaggacctgactgtgaggaaaagagcacatttgttattggga
attgagaaaatctacactttactgttggagttagatgacttagagaagaaagccctagca
ttgcctgaagacgataaagacattgaacaagaacgtcagaaactagtcaatcagatcttc
aacagtctaagtgtaccaaacaaactgcaaacagggcaggataattattttcttcaaatc
cttagtatcaacaaaggtcggaggttaataggtcgtgtccttcctgtgttatcttcaaat
caagcagcgtctgttgttgaagcgttgctgtataacataaattatttcatcaagaaagac
caacaagaaaacaatttgttgtcagtttatctgcctcttgccaatataatcagaagcagt
gacttagaaaaactggtagcatttatgacaagttttacctcaggtgccaatgttgtctct
tcagtgcatcatgggacttcacctgtttcatcagctgtgcagaataagtttggtatatct
attttgtgtctactgctgtgccaaggagaacacatcttatcaactcagtcaccacttgat
atcaatgcagacacagaaggtgcatggaatgagttggtgttaaaggttggccaggaacta
agcagtgttcctgtagagaatatagctattcctactgagagtggtagtaacagtactgta
ttagagcactttggacgatatgtggacaaacggacatttctttttctccaaaactgcatc
aagtcaagtaaatcatcattgataatatcacccaaggtgaactag
DBGET
integrated database retrieval system
