Ptychodera flava: 139152481
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Entry
139152481 CDS
T10724
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pfll Ptychodera flava
Pathway
pfll03013
Nucleocytoplasmic transport
pfll03015
mRNA surveillance pathway
pfll03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139152481
09122 Translation
03013 Nucleocytoplasmic transport
139152481
03015 mRNA surveillance pathway
139152481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfll03019
]
139152481
03041 Spliceosome [BR:
pfll03041
]
139152481
Enzymes [BR:
pfll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139152481
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139152481
Spliceosome [BR:
pfll03041
]
Complex C
Other components
EJC/TREX
139152481
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139152481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-GeneID:
139152481
NCBI-ProteinID:
XP_070581735
LinkDB
All DBs
Position
16:complement(1764415..1773002)
Genome browser
AA seq
449 aa
AA seq
DB search
MNYFLKNVTADAFDKITSGFKMAENNIQEEELLDYDEDEQQETTQEAGGDVDKKKDVKGT
YVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAV
FVLATLQQIEPVDGQVSVLVLCHTRELAFQIAKEYERFSKYMPTIKVGVFFGGINIKKDE
MTLKNNCPHVVVGTPGRILALARNKTLNLKHVKHFILDECDKMLEQLDMRRDVQDIFRQT
PHEKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDETKLTLHGLQQYYVKLKDNEKNRKL
FDLLDVLEFNQVVIFVKSVQRCIALSQLLVEQNFPAIAIHRAMNQEERLSRYQQFKDFQK
RILVATNLFGRGMDIERVNIAFNYDMPEDSNTYLHRVARAGRFGTKGLAITFVSDETDAK
ILNEVQDRFEVNIGELPDEIDISSYIEQR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgaattactttcttaaaaatgttactgcagatgcatttgataagataacaagtggattc
aaaatggctgaaaacaacatccaggaagaggaattgttggattacgatgaagatgaacag
caggagactacacaagaggcagggggtgatgtggacaagaagaaggatgtcaaaggaacc
tatgtatcaatacacagttcaggatttagggattttcttctgaaacctgagttactacgg
gctatcgtggactgtggctttgaacatccatcagaagttcagcatgagtgtattcctcaa
gctattctcagtatggatgtgctttgtcaagctaaaagtggtatgggcaagactgctgtc
tttgtcctcgctacattgcagcaaattgaaccagttgatggtcaggtttctgtactggtt
ctgtgtcacacaagggaattggcatttcagattgccaaagaatacgagaggttctccaaa
tacatgccaacaatcaaagttggtgtgttctttggtggaatcaacatcaagaaagacgag
atgaccttgaagaacaactgtcctcacgtagtggttggaaccccggggcgtatactggca
ttggcaagaaacaagaccctcaacctgaagcatgtcaagcatttcatcttggatgagtgt
gataagatgcttgaacagcttgacatgcgaagggatgtgcaagatatcttccgccaaaca
cctcacgagaagcaagtcatgatgttcagcgctactctcagcaaagatatccgaccagtg
tgcaagaaatttatgcaagatcccatggaagtgtatgtagatgatgaaacaaagttaacc
ctccatggactccagcagtactatgtaaagctcaaggataatgagaagaaccgcaaattg
tttgatttgctagatgtgctagaatttaatcaggtggtgatatttgtcaagtcagttcag
aggtgcatagctttatcacagcttttagtagagcagaatttcccagccatagccattcac
cgtgcaatgaatcaggaagagagactgtctcgctaccaacagttcaaagatttccagaaa
agaatccttgttgccacaaatctgtttggccgtggcatggatattgagagagtcaacatt
gccttcaattacgacatgccagaagactccaacacatacctacacagagtggcccgtgct
gggaggtttggcaccaagggtttagccatcacatttgtgtctgatgaaacagatgccaag
attttgaatgaagtacaagacagatttgaagtcaacattggagaactgcctgatgagatt
gacatttcatcctacattgaacaacgttaa
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