Ptychodera flava: 139152709
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Entry
139152709 CDS
T10724
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pfll Ptychodera flava
Pathway
pfll03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfll00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139152709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfll03019
]
139152709
03041 Spliceosome [BR:
pfll03041
]
139152709
Messenger RNA biogenesis [BR:
pfll03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139152709
Spliceosome [BR:
pfll03041
]
Complex B
Other components
Prp19-related factors
139152709
Complex C
139152709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
RPN7
ARM_TT21_C
Mad3_BUB1_I
TPR_15
NRDE-2
Motif
Other DBs
NCBI-GeneID:
139152709
NCBI-ProteinID:
XP_070582113
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All DBs
Position
16:8315107..8338755
Genome browser
AA seq
850 aa
AA seq
DB search
MPIAPERTDIFFEEDDLPYEEEILRNPYSVKCWLRFIEHKSEGPAKAINVVYERALKELP
GSYKLWYNYLKHRRKHVKGRCITDPAYDDVNNAHERALVFMHKMPRIWLDYCQFLMDQCK
ITRTRRTFDRALRALPITQHHRIWPLYLKFVRNLPLPETAVRVYRRYMKLLPENAEEYIE
YLKNIDRLDEAAVRLYDIVNEEDFVSKEGKSNHQLWHDLCDLICKNPKKVSSLKVDPIIR
SGIKRFTDERGQLWCSLADYYIRSGHFEKARDIYEESIQTVTTVRDFTQVFDAYAQFEES
MISAKMETTAELGNTEDDDIDLEIRLERFENLMDRRPLLLNSVLLRQNPHNVHEWHKRVK
LFEGKPKDIINTYTEAVQTVDPQLATGKLYTLWVEFAKYYEQHEQLAEARVIFEKGTKVP
YVKVEDLASVWCEWTEMEIRHENYDECLKLMQRATAMPSRKVAYHDKSEPVQKRLYKSLK
VWSLYADLEESFGTFKSTKAVYDRIIDLKIATPQIIINYGMFLEEHNYFEEAFKAYERGI
ALFRWPNVYDIWNTYLTKFIKRYGGKKLERSRDLFEQCLDGCPPKFAKSIYLLYAKLEED
FGLARHAMAVYERATKAVLPEEQYEMFNIYIKRAAEIYGVTHTRPIYEEAIEVLTNDQAR
EMCLRFADLERKLGEIDRARAIYGHCSQMCDPRVTPSFWQTWKEFEIKHGNEDTVREMLR
IKRSVQATYNTQVNFMSAQMLAASGTGTGTVSDLAPGSSGGDEMKLLEQRAHALAAEAKA
DKPLLKKDILFVSGGKTTDEQMEEAVKTVNPEEINIDDDDEDSDEGPDEVEIEKKSVPSE
IFGSLKENDD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccgatcgcaccggagagaacagatattttctttgaagaagatgatttaccctatgaa
gaggagatattgagaaatccttactctgtaaagtgctggttgcgattcattgagcacaag
agtgaaggacctgcaaaagctatcaatgttgtctatgagagagcattgaaggaattgcca
ggaagttacaaactttggtacaattacctgaaacatcgaaggaagcatgttaaaggccga
tgtatcactgacccagcgtatgatgatgtcaacaatgcacatgaaagagcccttgtcttt
atgcataagatgccgaggatctggttggactactgtcagtttctgatggaccagtgtaaa
ataaccagaactagaaggacctttgacagggcattacgagcacttccaatcactcagcat
catagaatatggccactctacttaaaatttgtacgaaatcttccactgccagagactgct
gtcagggtctatcgtaggtacatgaagttactgcctgagaatgctgaggagtacatagaa
tatttgaagaacattgacaggctggatgaagcagcagttcgtctttatgacattgtgaat
gaggaagattttgtttcaaaggaaggcaagtcaaaccaccagctgtggcatgacctgtgt
gaccttatctgcaagaatccaaagaaggtgtcttcgttgaaagttgaccctatcatcaga
agtggtatcaaacgtttcactgatgaaagaggccagctttggtgttcactggctgattac
tacatcaggagtggacattttgagaaggccagagacatctatgaggaatcaatacagacc
gtgaccacagtgcgtgatttcacccaagtctttgatgcgtatgcacagtttgaagagagc
atgatcagtgccaaaatggaaacaactgctgaattaggaaatactgaagatgatgacatt
gaccttgaaattcgactggagaggtttgaaaatctcatggacagacgacctctgcttctg
aacagcgtcctgcttcggcaaaatccccacaatgtccacgagtggcacaagagagtcaag
ctgtttgagggtaaacccaaggacatcatcaacacatacactgaggcagttcagactgta
gacccacagctggccacaggaaagctatacacactgtgggtggagtttgcaaaatactac
gaacagcatgagcagttagctgaggctagagttatttttgagaaaggtaccaaggttcca
tatgtcaaagttgaagacctggcaagtgtttggtgtgaatggacagagatggaaatcaga
catgagaactatgacgagtgcttgaagctaatgcagagagctacagccatgccttcaagg
aaagttgcctaccatgacaagagtgaacctgtacagaagaggctatacaagtccctcaaa
gtctggtcattgtatgctgacttggaagaaagttttggaacattcaagtcaacaaaagct
gtttatgatcgaatcatagatctgaaaatagccactccacagatcattatcaattacgga
atgtttctagaagagcataactactttgaagaagctttcaaggcatatgaacgtggcata
gcattattccgatggccaaacgtttatgatatttggaatacctacctgacaaaattcatc
aagagatatggtggaaagaagctagaaagaagcagagacctatttgaacagtgccttgat
ggttgcccaccaaaatttgccaaatcaatttacctactgtatgcaaaactagaagaagat
tttggtctagccaggcatgctatggctgtctatgaaagagccaccaaggctgtccttcct
gaggaacaatatgagatgtttaatatttacatcaagagagctgctgaaatctatggagtg
acccataccagacctatctatgaagaggccattgaggttctcaccaatgaccaggcaagg
gagatgtgtctgcgctttgctgacctagaacgcaaactgggtgaaattgaccgtgctagg
gcaatatacggtcactgctcacagatgtgtgacccaagggtgacaccaagtttttggcag
acgtggaaagagtttgaaatcaaacatggaaatgaagacacagtgagagagatgttacga
atcaagagaagtgttcaggcaacgtacaatacacaggtgaatttcatgtcagcacaaatg
ttggcagcgtctggaacaggaaccggaacagtatcagacttggcaccaggatccagtggt
ggagatgagatgaaattactggaacagagagcacatgccctggctgctgaagctaaagct
gacaaaccactgcttaagaaggacattctctttgtcagtggtggaaaaaccactgacgag
cagatggaagaggcagtcaaaactgtcaacccagaggaaatcaacattgatgatgatgat
gaagacagtgatgaaggcccggatgaagtggaaatcgaaaagaagagtgtaccgtcagaa
atctttggcagtttgaaagaaaatgacgactga
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