Pampinifervens florentissimum: G3M65_06780
Help
Entry
G3M65_06780 CDS
T11282
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pflo Pampinifervens florentissimum
Brite
KEGG Orthology (KO) [BR:
pflo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pflo03016
]
G3M65_06780
Enzymes [BR:
pflo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
G3M65_06780
Transfer RNA biogenesis [BR:
pflo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
G3M65_06780
Prokaryotic type
tRNA splicing ligases
G3M65_06780
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QID33490
LinkDB
All DBs
Position
1159098..1160540
Genome browser
AA seq
480 aa
AA seq
DB search
MGLKESLLKVSDFVYKLPENTLQGQKVPVYFYLSDKLFELLEEDAIRQAGNAATLPGVEK
AIYVMPDVHVGYGFPVGGVMATDIEEGVISPGSIGYDINCGVRLIATNLTADRVQPVRRE
LMQEILKSVPAGVGSTGRLRLSKSELSEVAVKGARWAVEKGFGFEEDLTHIESGGALPEA
DPSKVSDFAFQRGAEELGTVGSGNHFVEVQYVDEIYDEEVAQKLGLSVGQVTIMVHSGSR
GFGHQVCVDYLKTAREALRKYQINIPDMQLACMPFSSLEGQDYFKAMNSAANYAFANRQI
LGYLTADTVRRFFGLSWEELGYRLIYDLAHNIGKVEEHGIDGKRKKLLVHRKGATRAFPP
HNPDIPPAYRDIGQPVLLPGDVGRYSFLLVGQEKSMDMSFGSACHGAGRLMSRTKAKEFV
KKEGLEKVLGGLVVVARGKGTVAEEIPQAYKDVSEVAYVVHSLGIAKLVARFKPLGTLKG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgaaggagagcctcctcaaggtttccgattttgtgtataaacttccagagaat
acactgcaagggcagaaggttccagtatacttctaccttagtgataaactctttgagctt
cttgaggaggatgccataaggcaggcgggcaacgccgcaaccttgcctggcgttgaaaaa
gctatatatgttatgccagatgtgcatgtgggttatggctttcctgtggggggcgtgatg
gcaacggatatagaggagggtgtcataagccccgggtccataggatacgatataaactgc
ggggtaaggctcatagccaccaaccttaccgcagacagggttcaacccgtaagaagagag
cttatgcaggagatactcaagagtgtgcctgcgggtgtaggttcaacaggaaggcttaga
ctttcaaaatctgagctttctgaagttgcagtaaagggtgctcgctgggcggtggaaaag
ggttttggctttgaagaagaccttacgcatatagaaagcggtggagcccttcccgaggct
gacccttcaaaggtttcagactttgcctttcaaagaggggcagaagagcttggaactgta
ggctctggaaaccactttgtagaagtgcaatacgtggatgagatatacgacgaagaagtt
gcacaaaaacttgggctaagcgtagggcaggttaccataatggttcattcaggttcaagg
ggctttggtcatcaggtgtgcgtggactatctaaagaccgcaagggaagccttaagaaag
tatcaaataaatataccagatatgcaactggcttgcatgccctttagctccctagagggg
caggactactttaaagctatgaactccgctgccaactacgcctttgccaacaggcagata
ttgggatatctgaccgcagacacagtccgcaggttttttggactttcatgggaagagctt
ggctacaggcttatttacgaccttgcccacaacataggtaaagtggaagaacacgggata
gatggtaaaagaaagaaactcctcgtgcaccgcaaaggtgccaccagagcctttccgcca
cacaaccctgacattccgcctgcctatagggatataggtcaaccggtgcttctgccaggg
gatgtgggaaggtattctttcctccttgtgggtcaagaaaaaagcatggatatgagcttt
ggaagcgcatgccatggggcaggaaggctcatgtcaagaacaaaggcaaaagagtttgta
aaaaaagaagggcttgaaaaagtgcttggcggtcttgtggtagtggcaaggggcaaagga
actgtggcggaggaaattccgcaagcatacaaggatgtctcagaggttgcctatgtggtt
cattcactgggtatagcaaaactggtggcgaggttcaaacccttaggcactttaaagggt
taa
DBGET
integrated database retrieval system
