Pampinifervens florentissimum: G3M65_07030
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Entry
G3M65_07030 CDS
T11282
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pflo Pampinifervens florentissimum
Pathway
pflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3M65_07030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pflo03019
]
G3M65_07030
03009 Ribosome biogenesis [BR:
pflo03009
]
G3M65_07030
Enzymes [BR:
pflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G3M65_07030
Messenger RNA biogenesis [BR:
pflo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3M65_07030
Ribosome biogenesis [BR:
pflo03009
]
Prokaryotic type
rRNA helicases
G3M65_07030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Utp25_C
HEM4
PRAI
CMS1
Helicase_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QID33538
UniProt:
A0A6C1BS36
LinkDB
All DBs
Position
complement(1203671..1204768)
Genome browser
AA seq
365 aa
AA seq
DB search
MDFDFSQLSIPLRKALKDMGFEKPTPIQKEAIPLALKGYDIMGQAATGTGKTAAFGIPII
EGSEKEEGTTALIMTPTRELALQVKEQLYQLSKYKGLKVFSFYGGTPVQKDLELLWKITP
NIVVGTPGRIKDLTMRGLFNFESLKYFVLDEADRMLDMGFIEDIEWIIAQLPKERQTFLF
SATIPREVEELAKKHLKKDYKFVKVITEELKPKIEERLIKLSSSGQKMSELEKILREHVL
EKVIVFVKTKKDAKDITQELKRKGFNVVSLHGDMTQRQRENSLRLFRDGKVKIVVATDVA
SRGLDIKGVSLVINYHIPEDPEVYIHRIGRTGRIGTYGKAYSLITPEDSKALWRIKKLKE
SYAQA
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atggactttgatttctcacagcttagtattcccttgcgtaaggcactcaaggacatgggc
tttgaaaaacccactccaattcagaaggaagccatacccttagcccttaagggctacgac
ataatgggtcaggcggcaacaggaacagggaaaaccgccgcctttggtatacctataatt
gaaggaagcgaaaaggaagaaggaacaaccgcccttataatgacacctacaagagagctt
gctcttcaagtaaaagaacagttatatcagctttctaagtataagggactaaaggtcttt
agcttctacggtgggacaccagtccagaaggaccttgagcttctatggaagataacacca
aacatcgtagtaggcacgcctgggaggataaaggaccttaccatgagaggcctttttaac
tttgaaagcctaaaatacttcgttttagatgaggcggatagaatgcttgatatgggcttt
atagaagacattgagtggataatagctcagcttccaaaggaaagacagacctttctcttt
tctgctaccataccaagagaggtagaagagcttgccaagaaacacctaaaaaaggactac
aagtttgttaaggttataacagaagaactaaagccaaagatagaggaaaggcttataaag
ctgagttcctctggacaaaagatgtctgagcttgaaaagatactgagggaacatgtcctt
gaaaaggttatagtctttgtaaagacaaaaaaggatgcaaaggatataacgcaagagctg
aaaagaaagggctttaatgtggtctcccttcatggagatatgacacaaaggcagagggaa
aactctctaagacttttcagagatggcaaggttaagatagtagtggctacagatgtagcc
tcaagagggcttgacataaagggtgtgagccttgtgataaactaccatatcccagaagac
ccagaggtatacatacaccgcataggtaggactggaaggataggcacttatggaaaagcc
tacagccttatcacacctgaagacagcaaagctctctggaggataaagaagttgaaagag
agctacgctcaagcatag
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